Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00142 ATGTACACATCAAAGAAGAAAATCAGCAAAGATAAGGGTGCTGAGCCAACTGAATTCGAGGAAACCGTTGGACAGGCTTTGTTTGATCTAGAAAATACCAACAATGAGCTGAAAAGTGAGCTCAAAGATTTATACATAAACTCAGCAGTCCAAATCGATGTTTCTGGCAACCGCAAGGCTGTGCTTATCCAAGTCCCTTACAGATTGAGGAAGGGTTTCCGCAAAATTCATGTCAAGCTTGTTAGAGAGCTTGAGAAGAAATTTAGCGGCAAGGAAGTAATTGTGATTGCCACAAGGAGGATTGTTCGGCCTCCAAAGAAAGGCTCCGCTGCTCAGCGCCCCCGCAGCCGTACACTTACTGCTGTGCACGAAGCAATTCTTGAAGATATCGTATTACCTGCTGAGATTGTTGGGAAGCGTACTCGTTACAGAGTTGATGGATCAAAGATCATGAAGGTGTTTTTGGACCCAAAAGAGCGTAATAATACCGAGTACAAGTTGGAGACATTTGCTGCAGTTTACAGGAAACTATCAGGCAAAGATGTTGTGTTTGAGTATCCAGTTACTGAGGCTTAG 576 0.4358 MYTSKKKISKDKGAEPTEFEETVGQALFDLENTNNELKSELKDLYINSAVQIDVSGNRKAVLIQVPYRLRKGFRKIHVKLVRELEKKFSGKEVIVIATRRIVRPPKKGSAAQRPRSRTLTAVHEAILEDIVLPAEIVGKRTRYRVDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPVTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00142 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre9g00142 191 Coils Coil 27 47 - -
Trre9g00142 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre9g00142 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00142 Trre-Chr9 1188227 1189483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00142 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 77.487 7.70e-114 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00142 K02993 - gmx:100527642 348.206