Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00118 ATGGATACACCAGAGAGGAACCAGATCAACACTACTCTCTCTAAGTTCGAGGATTCACCAGTGTTCAACTATATCAACAATTTATCTCCTATAAAGCCAGTTAAATCTGCTCACATTACTCAAACTTTCAATTCACTTAGCTTTTCGTCTCCTCCGTCTGTTTTCACATCACCACATGCCACCTCTTTCAAGGAGTCTAGATTTTTACGCCGACATAACCTACCGAGCGCATCAAAGCCTAAGGATTCGTCTGAAGATGTAAATAAAGGGTACTCAAATGAAGTGGCTCTTGCAGATTCCACTCTTTCACATCATAACTCAAGTGAATTACATGAAAGTGCTGGTCAAGAGATTTCGGTAGGAGATGCTACTATTGAGCTATCGAATGAACAGACAAAGTTCTCAGATGAGTTACCACAGGCCTTGCAGTATAACTGTGGTAGTCCTGGTTATGACCCTCCGCTATGTGGTGATGAGGCTAACTCTCTTTTGGAATTGTCTGGTGAAGATGTATCGGATGTTGCTTATGTTCGGGAAGATAGTAAAACAGATTTGGTTGAGGCTGATATGCATCTTCAAGGAACAAGTCAGATCGATCCAAAGGGTGAAGGCTCTGACTGTGATTGGGATGGTTTAATTCACAATGCTGCTGCTGGTATGTTAATTGGAGCAGAAGCTTTTAAGGGTTTAGCGTTTAAGGGTCTAATGCAGGGCTCTTCTATACGACTTAGCGATTTTGTGCCCCTGCTACAACAATCTACTAGCAATAATGATCAGAAAATACACATGGTTGACTCAGTTGCTTCTGGTTCTGAACATGAAATTGAAAATCATTGTTCTGAGCTAGTTGCTGTGACAGACACTGACCCTACACAGGACAATCTTGCTAATGGTTCTTTGATGACTAGCAATCCAAATGAGAAAATGGAGAATGAGCTTGTTTCTGTCACGCACCGTGGTATTCGGAGGCGCTGTCTTGACTTTGAGATGGCCAGTGTGCGAAAGAAGATCTCAGATAATAATTCAAACGCCGGCTCTAGTACAACACAGTCGGAAGTAAGAAATGCTGCGGATGAAAAACAACTGCTCCCAGCAAAACGCAATGCTAATTCACAAAGGTGCATTTTACCGGGTATCGGTTTACACCTTAATGCACTTGCTACTGTAAAGGATCACAAAGGCAAGCAAAACGAAAATGCGACTTCTGAAAGACAACTCAGTCTGGCCAACTCTACTTCCTTGCTACTATCTGCATGCCAAGACCATCAGCACCTATCGGTCTTATCTGTATCAGTATCCTCTGAAAGAGAATTGGACCCATCAGACAATGGGGTTCATCCTGCTGAAGATTGTCCCCAGGCACTTGCTTACATGGCTGCTGAAGATTTCAACCCGAATAGCCCCAAAAAGAAAAGGCAAATGAAGCGTAAGTTAGAGCCAGTTGGTGAAACCGAGGGCTGCAAACGTTGTAATTGCAAGAAATCAAAGTGCCTGAAACTTTATTGTGAGTGTTTTGCTGCTGGTGTTTACTGCATTGAGCCCTGCTCCTGTCAGGAATGCTTCAACAAACCTATTCATGAAGATACTGTTCTTCAAACTCGCAAACAGATTGAGTCTCGCAACCCTCTTGCATTTGCTCCTAAAGTCATTCGAAGTGCAGACTCTGTGCCTGAAGTTGGGATTGACCCAAACAAAACTCCAGCTTCAGCGCGCCATAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGCGGTGTTGGTTGCTCCATTAGCTGCAGATGTGAAGGGTGCAAGAACGCATTCGGCAGAAAGGATGGGTCTGCTTCAATAGGGATAGAAGGTGAGATAGAAGAAGAAACTGAAACAAGTGACAAGGGTGTGGAGGAAAAGGCTATTCAGAAAACTGAGATTCAAAATATTGAAGATCATCAAGAGTCTTCTTTGGTCTCAACACCGTTACAGCTTTCCAGGCCAATGCTTCCGATGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCACTGGTTCTGGATATTTTGCCACCCAAAAGCTTGCGATGCCAAATTCTCTTTGGTCTCAATCTAAGCCTTTTCAGACTGTTACAGACGATGATATGCCAGAGATTCTCCGCGGTGATAGCTCTCCTGTTGCATGCATCAAAACATCATCCCCAAATGGCAAGAGGATCTCTTCTCCTAACTGTGAAGTGGGATCATCTCCTGCTCGCAGAGGCGGAAGGAAGTTGATATTACAATCTATTCCTTCGTTTCCTTCTCTCACCACTCACCCTTAA 2334 0.4353 MDTPERNQINTTLSKFEDSPVFNYINNLSPIKPVKSAHITQTFNSLSFSSPPSVFTSPHATSFKESRFLRRHNLPSASKPKDSSEDVNKGYSNEVALADSTLSHHNSSELHESAGQEISVGDATIELSNEQTKFSDELPQALQYNCGSPGYDPPLCGDEANSLLELSGEDVSDVAYVREDSKTDLVEADMHLQGTSQIDPKGEGSDCDWDGLIHNAAAGMLIGAEAFKGLAFKGLMQGSSIRLSDFVPLLQQSTSNNDQKIHMVDSVASGSEHEIENHCSELVAVTDTDPTQDNLANGSLMTSNPNEKMENELVSVTHRGIRRRCLDFEMASVRKKISDNNSNAGSSTTQSEVRNAADEKQLLPAKRNANSQRCILPGIGLHLNALATVKDHKGKQNENATSERQLSLANSTSLLLSACQDHQHLSVLSVSVSSERELDPSDNGVHPAEDCPQALAYMAAEDFNPNSPKKKRQMKRKLEPVGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEVGIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSASIGIEGEIEEETETSDKGVEEKAIQKTEIQNIEDHQESSLVSTPLQLSRPMLPMPFSSKGKPPRSFVTTITGSGYFATQKLAMPNSLWSQSKPFQTVTDDDMPEILRGDSSPVACIKTSSPNGKRISSPNCEVGSSPARRGGRKLILQSIPSFPSLTTHP 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00118 777 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 574 609 IPR005172 -
Trre9g00118 777 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 488 523 IPR005172 -
Trre9g00118 777 SMART CXC_2 485 526 IPR033467 -
Trre9g00118 777 SMART CXC_2 571 612 IPR033467 -
Trre9g00118 777 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 774 IPR044522 GO:0003700
Trre9g00118 777 MobiDBLite consensus disorder prediction 735 751 - -
Trre9g00118 777 ProSiteProfiles CRC domain profile. 486 611 IPR005172 -
Trre9g00118 777 MobiDBLite consensus disorder prediction 735 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00118 Trre-Chr9 1057466 1061759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00118 1 773 CPP Transcription Factor Family AT3G22780 43.196 6.20e-156 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre9g00118 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00118 - - mtr:11423771 1254.97