Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00117 ATGGATACACCAGAGAGGAACCAGATCAACACTACTCTCTCTAAGTTCGAGGATTCACCAGTGTTCAACTATATCAACAATTTATCTCCTATAAAGCCAGTTAAATCTGCTCACATTACTCAAACTTTCAATTCACTTAGCTTTTCGTCTCCTCCGTCTGTTTTCACATCACCACATGCCACCTCTTTCAAGGAGTCTAGATTTTTACGCCGACATAACCTACCGAGCGCATCAAAGCCTAAGGATTCGTCTGAAGATGTAAATAAAGGGTACTCAAATGAAGTGGCTCTTGCAGATTCCACTCTTTCACATCATAACTCAAGTGAATTACATGAAAGTGCTGGTCAAGAGATTTCGGTAGGAGATGCTACTATTGAGCTATCGAATGAACAGACAAAGTTCTCAGATGAGTTACCACAGGCCTTGCAGTATAACTGTGGTAGTCCTGGTTATGACCCTCCGCTATGTGGTGATGAGGCTAACTCTCTTTTGGAATTGTCTGGTGAAGATGTATCGGATGTTGCTTATGTTCGGGAAGATAGTAAAACAGATTTGGTTGAGGCTGATATGCATCTTCAAGGAACAAGTCAGATCGATCCAAAGGGTGAAGGCTCTGACTGTGATTGGGATGGTTTAATTCACAATGCTGCTGCTGGTATGTTAATTGGAGCAGAAGCTTTTAAGGGTTTAGCGTTTAAGGGTCTAATGCAGGGCTCTTCTATACGACTTAGCGATTTTGTGCCCCTGCTACAACAATCTACTAGCAATAATGATCAGAAAATACACATGGTTGACTCAGTTGCTTCTGGTTCTGAACATGAAATTGAAAATCATTGTTCTGAGCTAGTTGCTGTGACAGACACTGACCCTACACAGGACAATCTTGCTAATGGTTCTTTGATGACTAGCAATCCAAATGAGAAAATGGAGAATGAGCTTGTTTCTGTCACGCACCGTGGTATTCGGAGGCGCTGTCTTGACTTTGAGATGGCCAGTGTGCGAAAGAAGATCTCAGATAATAATTCAAACGCCGGCTCTAGTACAACACAGTCGGAAGTAAGAAATGCTGCGGATGAAAAACAACTGCTCCCAGCAAAACGCAATGCTAATTCACAAAGGTGCATTTTACCGGGTATCGGTTTACACCTTAATGCACTTGCTACTGTAAAGGATCACAAAGGCAAGCAAAACGAAAATGCGACTTCTGAAAGACAACTCAGTCTGGCCAACTCTACTTCCTTGCTACTATCTGCATGCCAAGACCATCAGCACCTATCGGTCTTATCTGTATCAGTATCCTCTGAAAGAGAATTGGACCCATCAGACAATGGGGTTCATCCTGCTGAAGATTGTCCCCAGGCACTTGCTTACATGGCTGCTGAAGATTTCAACCCGAATAGCCCCAAAAAGAAAAGGCGTAAGTTAGAGCCAGTTGGTGAAACCGAGGGCTGCAAACGTTGTAATTGCAAGAAATCAAAGTGCCTGAAACTTTATTGTGAGTGTTTTGCTGCTGGTGTTTACTGCATTGAGCCCTGCTCCTGTCAGGAATGCTTCAACAAACCTATTCATGAAGATACTGTTCTTCAAACTCGCAAACAGATTGAGTCTCGCAACCCTCTTGCATTTGCTCCTAAAGTCATTCGAAGTGCAGACTCTGTGCCTGAAGTTGGGATTGACCCAAACAAAACTCCAGCTTCAGCGCGCCATAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGCGGTGTTGGTTGCTCCATTAGCTGCAGATGTGAAGGGTGCAAGAACGCATTCGGCAGAAAGGATGGGTCTGCTTCAATAGGGATAGAAGGTGAGATAGAAGAAGAAACTGAAACAAGTGACAAGGGTGTGGAGGAAAAGGCTATTCAGAAAACTGAGATTCAAAATATTGAAGATCATCAAGAGTCTTCTTTGGTCTCAACACCGTTACAGCTTTCCAGGCCAATGCTTCCGATGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCACTGGTTCTGGATATTTTGCCACCCAAAAGCTTGCGATGCCAAATTCTCTTTGGTCTCAATCTAAGCCTTTTCAGACTGTTACAGACGATGATATGCCAGAGATTCTCCGCGGTGATAGCTCTCCTGTTGCATGCATCAAAACATCATCCCCAAATGGCAAGAGGATCTCTTCTCCTAACTGTGAAGTGGGATCATCTCCTGCTCGCAGAGGCGGAAGGAAGTTGATATTACAATCTATTCCTTCGTTTCCTTCTCTCACCACTCACCCTTAA 2325 0.4357 MDTPERNQINTTLSKFEDSPVFNYINNLSPIKPVKSAHITQTFNSLSFSSPPSVFTSPHATSFKESRFLRRHNLPSASKPKDSSEDVNKGYSNEVALADSTLSHHNSSELHESAGQEISVGDATIELSNEQTKFSDELPQALQYNCGSPGYDPPLCGDEANSLLELSGEDVSDVAYVREDSKTDLVEADMHLQGTSQIDPKGEGSDCDWDGLIHNAAAGMLIGAEAFKGLAFKGLMQGSSIRLSDFVPLLQQSTSNNDQKIHMVDSVASGSEHEIENHCSELVAVTDTDPTQDNLANGSLMTSNPNEKMENELVSVTHRGIRRRCLDFEMASVRKKISDNNSNAGSSTTQSEVRNAADEKQLLPAKRNANSQRCILPGIGLHLNALATVKDHKGKQNENATSERQLSLANSTSLLLSACQDHQHLSVLSVSVSSERELDPSDNGVHPAEDCPQALAYMAAEDFNPNSPKKKRRKLEPVGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEVGIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSASIGIEGEIEEETETSDKGVEEKAIQKTEIQNIEDHQESSLVSTPLQLSRPMLPMPFSSKGKPPRSFVTTITGSGYFATQKLAMPNSLWSQSKPFQTVTDDDMPEILRGDSSPVACIKTSSPNGKRISSPNCEVGSSPARRGGRKLILQSIPSFPSLTTHP 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00117 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 485 520 IPR005172 -
Trre9g00117 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 571 606 IPR005172 -
Trre9g00117 774 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 771 IPR044522 GO:0003700
Trre9g00117 774 SMART CXC_2 482 523 IPR033467 -
Trre9g00117 774 SMART CXC_2 568 609 IPR033467 -
Trre9g00117 774 MobiDBLite consensus disorder prediction 732 748 - -
Trre9g00117 774 MobiDBLite consensus disorder prediction 732 774 - -
Trre9g00117 774 ProSiteProfiles CRC domain profile. 483 608 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00117 Trre-Chr9 1057466 1061759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00117 1 770 CPP Transcription Factor Family AT3G22780 43.358 4.55e-158 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre9g00117 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00117 - - mtr:11423771 1260.36