Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00110 ATGGCCGTCGGAAAAAACAAGAGAATTTCAAAGGGAAAGAAGGGTGGCAAGAAGAAGGCTGCTGATCCCTTTGCTAAGAAGGATTGGTATGATATCAAAGCTCCTTCTGTTTTCCAAGTCAAAAATGTTGGCAAAACCCTTGTCACACGTACTCAGGGTACCAAGATTGCTTCTGAAGGACTCAAACATCGTGTGTTTGAGGTATCATTGGCTGATCTTCAAGGAGATGAGGACAATGCATTCAGGAAGATTAGGTTGAGGGCTGAAGATGTTCAGGGCAAAAATCTTTTGACCAACTTCTGGGGTATGGATTTTACCACTGACAAGCTTAGGTCGTTGGTGCGAAAATGGCAAACTTTGATTGAAGCTCATGTTGATGTTAAGACCACTGATAATTATACTTTGAGAATGTTCTGCATTGGCTTTACCAAGAGACGTAGCAACCAGGTTAAGAGGACATGCTATGCTCAATCCAGCCAGATCAAACAGATCCGTAGGAAGATGAGGGAAATTATGGTCAACCAGGCAACATCCTGTGATCTGAAAGAGCTTGTGCGCAAGTTTATCCCTGAGATGATTGGAAAAGAGATTGAGAAGGCTACATCTAGCATCTACCCACTTCAGAATGTTTTCATCCGTAAAGTCAAGATCCTGAAAGCTCCCAAGTTTGATCTTGGGAAACTGATGGAGGTTCATGGTGATTACTCTGAAGATGTTGGTACTAAGGTAGAGAGACCTGCAGAAGAGGCAGTTGTTGAGGGAACCCCAGAAATTGTTGGAGCTTAA 786 0.43 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIKQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPAEEAVVEGTPEIVGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00110 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Trre9g00110 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 251 - -
Trre9g00110 261 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g00110 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Trre9g00110 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Trre9g00110 261 MobiDBLite consensus disorder prediction 1 20 - -
Trre9g00110 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00110 Trre-Chr9 1022337 1024035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00110 1 261 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 84.351 5.77e-162 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00110 K02984 - gmx:100805519 456.832