Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00095 ATGTCGAATGAAGTTGCGAATATCAAAAGAGAAACGATTGCAGCATGCATGACTTGCCAACTTTGTAAGAACTTCTACAAACAAGCTACAACTATATCTGAATGTCTTCACACGTTTTGCAGAAAGTGCATTTATGACAAAATTAGTGATGAAGATTTGGAATGTTGTCCAGTTTGCAATATTGATTTGGGCTGTGTTCCACTTGAGAAACTAAGGCTGGACCACAGTAAGCTAAACCTAAGGTACATAGTTTTCCCTTCAAAGCGAAGAGAGGTGAAAGAACCTGAAGTTGTCGCCGCCTCAGTACCATTTCCAGCTAAAAGAAAAGAGAGATCTCTTTCATCCTTGGTGGTCAACACACCAAGAGTATCTGCACAATCAACCATGACAGGAAGAAGAACGGAACCTACAAGAAAAGCTAGCAGTCCGCGGTCCTCTAGTTTTTCCATTGAAAAGTCAATTCAACAAGAGGAAGAATTATTGGACAACCATCCCGAGAGTTCAAGCTCGCCTGAAACTTCAAATGAGTTGCATCAAAATAATGGACAGAGTGAGGGTAGTCAATCCACACCAAATAAAGAAGCAGAGAACGGTGCCAAATCATGGGATACGCAACGGTCTGATGCCAAACCAGAACATGTTAAAGTAAATGAGAGTGATTCTCTAGTTCAGAAAACCAAAAATAAGGAAAATAAACGCAAGGCAGAAGTTGAAGATGAAGAGAGTAGCCCTTTTCCAGTTTGTTCGGATACAGCAAAATCGAATAAATTGCGCAGAGTACGCAGGGAAAAGGAACCATTTGGAGAATCAGGTATATCTTCTGTCTCTACTGTAGGTCAAGAGAAGCAACTTAACACCCAAGCCAGCATTGAACAACTCTCACAACAATACCTTGAGGTAACCACAAATGAGCCAAATGCCTTAGCAGAACTTGAAAGGCATTTTACTGGTGAATTCTCAGAAGAAACCCCCTCTGAACAAGCTATTCCATCCACCATCATATCAGATATTAACCAACTAGAAGCCATACCTTTAAACAACACCTCACAACCAAAAAACACTCAACCAGAAACCATACCTTCAAACACCTTACAATCTGAAATTAACCAACCAGAAACTATCCATTCAGAAGCCATACCCTCAACCACCATACCAACATATACCATTGTACAACCAAACTCTGAACCACACCCTACAACTGTTGGAAGCAAGCCAAAGGAGGCATCTACACCCACACAAGGAAAAATACCAGTCACCAAAAGAAGGAAATTCACTGTGCACAATCTTGAAGAAGCATCGGAAAAGAAAGACTCAGGCTCCTCTGTAGCCAAGATATCTTCAATCTGTTCTGATAACCAACCTTCATCCTCCAAGAACCTTTCTGATACCATTCTTAGCCAAGCTCTTAGCTCAACCCTCAAAGATATTGAGCATATGCTAAGAACCTTTAAAGATAAAATCAGAAAGTTATGCCTGTCTGTGCAAAATATGTCTATATCGCCAAGTCAAATGGATGATGAATGTAACTCTGAAGGAAGACATCATTCAGATGTTTGA 1557 0.4046 MSNEVANIKRETIAACMTCQLCKNFYKQATTISECLHTFCRKCIYDKISDEDLECCPVCNIDLGCVPLEKLRLDHSKLNLRYIVFPSKRREVKEPEVVAASVPFPAKRKERSLSSLVVNTPRVSAQSTMTGRRTEPTRKASSPRSSSFSIEKSIQQEEELLDNHPESSSSPETSNELHQNNGQSEGSQSTPNKEAENGAKSWDTQRSDAKPEHVKVNESDSLVQKTKNKENKRKAEVEDEESSPFPVCSDTAKSNKLRRVRREKEPFGESGISSVSTVGQEKQLNTQASIEQLSQQYLEVTTNEPNALAELERHFTGEFSEETPSEQAIPSTIISDINQLEAIPLNNTSQPKNTQPETIPSNTLQSEINQPETIHSEAIPSTTIPTYTIVQPNSEPHPTTVGSKPKEASTPTQGKIPVTKRRKFTVHNLEEASEKKDSGSSVAKISSICSDNQPSSSKNLSDTILSQALSSTLKDIEHMLRTFKDKIRKLCLSVQNMSISPSQMDDECNSEGRHHSDV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00095 518 MobiDBLite consensus disorder prediction 439 460 - -
Trre9g00095 518 MobiDBLite consensus disorder prediction 391 417 - -
Trre9g00095 518 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Trre9g00095 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Trre9g00095 518 MobiDBLite consensus disorder prediction 254 268 - -
Trre9g00095 518 SMART ring_2 19 59 IPR001841 -
Trre9g00095 518 MobiDBLite consensus disorder prediction 113 154 - -
Trre9g00095 518 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Trre9g00095 518 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Trre9g00095 518 MobiDBLite consensus disorder prediction 430 460 - -
Trre9g00095 518 MobiDBLite consensus disorder prediction 199 241 - -
Trre9g00095 518 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 283 IPR044807 GO:0004842
Trre9g00095 518 MobiDBLite consensus disorder prediction 113 280 - -
Trre9g00095 518 MobiDBLite consensus disorder prediction 166 198 - -
Trre9g00095 518 MobiDBLite consensus disorder prediction 391 416 - -
Trre9g00095 518 SUPERFAMILY RING/U-box 14 65 - -
Trre9g00095 518 CDD RING-HC_PCGF 17 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00095 Trre-Chr9 943480 946521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00095 5 252 C3H Transcription Factor Family AT2G30580 48.134 3.98e-69 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00095 K16277 - gmx:100815540 353.599