Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00082 ATGCTGGCGAATCATATCCAAAACGGCATCGAATCGGCGAGGGTAGCTTGGTCACAGATTCCTAACTCCGATGAATCACAGTTCGTTGATGAAGACGGCGTTGGTCTTGTTAAGAAGAACGATGGAAGTGCTGTTGAGAGTCTTGACTATGAAGTCATAGAGAATTTTGCTTATCGAGAAGAACAGAAGCATAGAAGAAGGAAGATGTATGTAAGTTACTTGCTGGTGGTGAAATGGTTCTTTGCGTTGCTCATTGGCATTTGTACTGGACTTGCTGCTGTTTTCATCAATATTTCAGTTGAAAATTTTGCTGGCTGGAAGTACTCGATGACATTTAATATAATTCAGAAATCATATGTCGCTGGCTTTATTGTATATATCCTGATCAACTTGGTTTTAGTGTTTTCCTCTGTATATATCATCACACAATTTTCACCAGCAGCTGCCGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAACGGAGTTGATACTCACGGCATCCTTCTTTTCAGAACTTTGATTGGAAAGGTATTTGGAAGCATTGGTTCAGTGGGGGGAGGCCTCGCTTTGGGTAAAGAAGGTCCTCTAGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCCACTAAGTATCATCTAAATTCAAGGTGGTTTAATGTATTCAAAAGTGACCGGGATCGCCGTGATCTTGTAACTTGTGGGTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTTGGTGGCGTATTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTAATGTGGCGTGTCTTTTTCACTTCTGCTATTGTGGCTGTTGTGGTGCGAACTGCAATGGGGTGGTGTAAGAGTGGAAAATGTGGACATTTTGGATCCGGCGGATTCATAATATGGGATGTGTCAGATGGTCAAGAGGATTACTCGTTTGCAGAGTTGTTTCCAATGGCTATTATTGGGGTTATTGGAGGTCTACTGGGAGCTTTATTTAACCAGCTTACACTTTATATTACTACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAACCGAGTCAAGATTATTGAAGCATGCCTTGTCTCCCTTCTAACATCAGTTATTTCATTTGGCTTGCCGCTTCTAAGAAAATGCAGTCCATGCCCTGAACCTGATCCTGCATCTGGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTTAATTTCTATTGTAGCAAAGACAACGAATACAATGACCTTGCTACTATTTTCTTCAATACACAGGATGATGCCATAAGGAACTTGTTCAGTGCAAAAACAATAAACGAGTACAGTTCCCAAAGTTTGTTAACCTTTTTGGTCATGTTTTATTCTTTAGCAGTTGTGACGTTTGGTACGGCCGTGCCTGCTGGTCAATTTGTTCCCGGTATTATGATAGGATCTACATATGGGCGTCTTGTTGGCATGTTTGTTGTAAAATATTACAGAAAACTCAACATTGAAGAGGGAACATATGCTTTGCTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTATGTGTCATTATGGTTGAAATCACAAATAACTTGAAACTTTTACCCCTTATTATGCTCGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAATGATGGCATATATGAAGAGCAAGCTCGATTGAGAGGCATTCCATTACTTGAATCCAAGCCCAAATATGAGATGCGGAATATGATAGCAAAGGAGGCCTGTGGGAGTGGAAGGGTCACCTCTTTCCCTCGTGTTGTTAAGGTTTCAGATGTATTTTCCATTCTGCAGAGCAACACACACAACGGTTTTCCAGTGATTGAACACACAAGAAGTGGAGAACCGCTTGTTATTGGATTAGTGCTTCGGAGTCATTTATTGGTCATTCTGCAGTCTAAGGTTGATTTCCAGCATAGTCCTTTACCCTCTGATCCAAGAGGGGGGGGCAGGTCAATAAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTCTTGACGATATACATCTAACATCAGAGGACTTGGAAATGTACATAGATCTTGCCCCATTTTTGAACCCCTCACCGTATATTGTACCGGAAGATATGTCTCTGACAAAGGTATACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCACGTGTTATTGGTTTAATAACCAGAAAAGATTTGTTAATTGAGGACGCGGAAAATGTGAATACATTAGAGCTCCGGGCAACTAGTAACACAGCATCAGAATAA 2331 0.4148 MLANHIQNGIESARVAWSQIPNSDESQFVDEDGVGLVKKNDGSAVESLDYEVIENFAYREEQKHRRRKMYVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGWKYSMTFNIIQKSYVAGFIVYILINLVLVFSSVYIITQFSPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKVFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDVSDGQEDYSFAELFPMAIIGVIGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSLLTSVISFGLPLLRKCSPCPEPDPASGIECPRPPGMYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYSLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNDGIYEEQARLRGIPLLESKPKYEMRNMIAKEACGSGRVTSFPRVVKVSDVFSILQSNTHNGFPVIEHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGGRSIRHDSGEFAKPVSSKGICLDDIHLTSEDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEDAENVNTLELRATSNTASE 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00082 776 Gene3D - 597 761 IPR046342 -
Trre9g00082 776 FunFam Chloride channel ClC3 70 387 - -
Trre9g00082 776 Pfam CBS domain 709 756 IPR000644 -
Trre9g00082 776 Gene3D Clc chloride channel 70 577 - -
Trre9g00082 776 CDD ClC_6_like 46 576 - -
Trre9g00082 776 SUPERFAMILY Clc chloride channel 61 578 IPR014743 -
Trre9g00082 776 CDD CBS_pair_voltage-gated_CLC_euk_bac 598 755 - -
Trre9g00082 776 PRINTS Plant CLC chloride channel signature 294 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre9g00082 776 PRINTS Plant CLC chloride channel signature 424 440 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre9g00082 776 PRINTS Plant CLC chloride channel signature 262 270 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre9g00082 776 PRINTS Plant CLC chloride channel signature 51 59 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre9g00082 776 PRINTS Plant CLC chloride channel signature 276 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre9g00082 776 ProSiteProfiles CBS domain profile. 708 765 IPR000644 -
Trre9g00082 776 SUPERFAMILY CBS-domain pair 581 755 IPR046342 -
Trre9g00082 776 SMART cbs_1 711 759 IPR000644 -
Trre9g00082 776 SMART cbs_1 597 649 IPR000644 -
Trre9g00082 776 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 35 759 - -
Trre9g00082 776 Pfam Voltage gated chloride channel 134 556 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre9g00082 776 PRINTS Chloride channel signature 525 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre9g00082 776 PRINTS Chloride channel signature 472 492 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre9g00082 776 PRINTS Chloride channel signature 507 523 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre9g00082 776 PRINTS Chloride channel signature 563 577 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre9g00082 776 PRINTS Chloride channel signature 146 163 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre9g00082 776 PRINTS Chloride channel signature 177 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre9g00082 776 PRINTS Chloride channel signature 241 260 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre9g00082 776 FunFam Chloride channel protein 700 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00082 Trre-Chr9 820305 828948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00082 1 776 Ion Channels AT5G26240 82.345 0.0 1241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00082 K05016 - gmx:100811908 1410.59