Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00078 ATGGAGCTTCAGAAGCGTCCAGATCATCACAACCTCCCGGAGAAGAAAGGTCAGAAGAGGAAACTCGAACAAGAGGAAGAAGAATTTCAACAACAGATCTCTCTTCCTCCCACCGGAGAAACACGCGACGCTCTTCTCTCCGACATCAATCAACACGTTTCAATCCTTCTTTCCACTTTTTCATCCAAAGAATCCGATAGAGCTTCTGCTAAGCGCGCCACTCACGCCCTCGCAGATCTTGCCAAAAACGAGGAAATTGTGAACCTGATTGTTGAAGGAGGTGCTATTCCGGCTTTGATTAAGCATCTTCAATCTCCTCCTTTGCCTCAAAACGACACCGTTCCGAAGCCGTTGCCGTTTGAGCACGAGGTTGAGAAAGGAAGCGCTTTCGCACTTGGACTTCTTGCCGTTAAGCCAGAACATCAACAGCTCATTGTTGATAGTGGTGCCGTAAAGCATCTTGTTGATCTTTTGAAGAGACATAAGAATGGATTAACATCACGTGCCATTAATAGTCTCATTCGGAGGGCTGCAGATGCAATCACTAACCTTGCTCATGAGAATAGCAGTATTAAGACACGTGTTAGGACGGAAGGTGGGATTCCACCACTAGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTACGGACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAAATTGTTGAATGCAATGCTCTTCCAACTCTAATTTTGATGCTCCGGTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGCGTGATCGGAAATCTGGTCCACTCCTCCCCCAATATAAAGAAAGAAGTTATTCTTGCTGGAGCCTTGCAACCTGTTATTGGATTACTTAGCTCCTGTTGCTCAGAAAGTCAGAGGGAAGCAGCATTGTTACTTGGACAATTTGCAGCAACCGATTCAGACTGCAAGGTTCACATTGTACAACGAGGTGCTGTACGGCCTTTGATAGATATGCTTCAGTCGCCCGATGTTCAGCTCAAAGAAATGTCTGCTTTTGCATTGGGAAGATTGGCACAGGACACACATAACCAAGCTGGTATTGCACACACTGGCGGCTTAATGCCATTGCTGAAGCTTCTTGATTCAAAAAACGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGCCCGACTTTATTAGAGTAGGTGGAATTAAGAGACTCCAGGATGGAGAGTTTATTATTCAAGCAACTAAGGATTGTGTTGCTAAGACATTGAAGAGACTAGAAGAGAAGATTCATGGTCGTGTGTTGAACCATTTGTTATATCTTATGCGGGTTTCAGAAAAGGCATTCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGATGACCAGAGAAAAATATTTATTGACCACAATGGGCTGGAGTTGCTTATTGGACTTTTGAGTTCATCCTGCCCTAAGCAGCAGCTCGACGGTGCCGTGGCTTTATGCAAGTTGGCCAACAAAGCTATGGCTCTGTCTCCTGTAGATGCTGCTCCTCCATCCCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCTGACGTTACATTTTTGGTTGAAGGTAAACGGTTTTATGCTCACAGAATCTGTTTACTTGCATCTTCCGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCCAGGGACATTGAGATTCCAAATATTAGATGGGAGGTCTTTGAGCTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTCTTGAAATTGCTCAAGATCTCCTCCGAGCAGCTGATCAATATCTCTTAGAAGGGCTTAAGAGACTATGTGAATACACAATTGCACAGGATGTATCACTGGAGAGTGTGTCATCTATGTATGAACTTTCGGAAGCCTTCAATGCTATATCATTGAGACAAACATGCATACTTTTTATCTTGGAGCACTTCGATAAATTAAGTGCAATGCCAGGACACTCTCATTTGATTCAGAGTACAATACCTGAGATCCGCAATTACTTTGTTAAAACTCTTACAAAGGGGAACTCCAACATCCAGGCATAG 2127 0.4354 MELQKRPDHHNLPEKKGQKRKLEQEEEEFQQQISLPPTGETRDALLSDINQHVSILLSTFSSKESDRASAKRATHALADLAKNEEIVNLIVEGGAIPALIKHLQSPPLPQNDTVPKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGAVKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRTEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIDMLQSPDVQLKEMSAFALGRLAQDTHNQAGIAHTGGLMPLLKLLDSKNGSLQHNAAFALYGLAENEDNVPDFIRVGGIKRLQDGEFIIQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQRKIFIDHNGLELLIGLLSSSCPKQQLDGAVALCKLANKAMALSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLEIAQDLLRAADQYLLEGLKRLCEYTIAQDVSLESVSSMYELSEAFNAISLRQTCILFILEHFDKLSAMPGHSHLIQSTIPEIRNYFVKTLTKGNSNIQA 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00078 708 ProSiteProfiles BTB domain profile. 542 609 IPR000210 GO:0005515
Trre9g00078 708 SMART BTB_4 542 639 IPR000210 GO:0005515
Trre9g00078 708 MobiDBLite consensus disorder prediction 1 42 - -
Trre9g00078 708 SUPERFAMILY ARM repeat 440 614 IPR016024 -
Trre9g00078 708 Pfam Armadillo/beta-catenin-like repeat 314 353 IPR000225 GO:0005515
Trre9g00078 708 Pfam Armadillo/beta-catenin-like repeat 230 269 IPR000225 GO:0005515
Trre9g00078 708 Pfam Armadillo/beta-catenin-like repeat 195 227 IPR000225 GO:0005515
Trre9g00078 708 SUPERFAMILY POZ domain 534 636 IPR011333 -
Trre9g00078 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 366 408 IPR000225 GO:0005515
Trre9g00078 708 Gene3D - 418 520 IPR011989 -
Trre9g00078 708 SUPERFAMILY ARM repeat 50 413 IPR016024 -
Trre9g00078 708 Gene3D - 44 210 IPR011989 -
Trre9g00078 708 SMART arm_5 314 354 IPR000225 GO:0005515
Trre9g00078 708 SMART arm_5 188 228 IPR000225 GO:0005515
Trre9g00078 708 SMART arm_5 138 186 IPR000225 GO:0005515
Trre9g00078 708 SMART arm_5 355 395 IPR000225 GO:0005515
Trre9g00078 708 SMART arm_5 83 137 IPR000225 GO:0005515
Trre9g00078 708 SMART arm_5 230 270 IPR000225 GO:0005515
Trre9g00078 708 SMART arm_5 470 510 IPR000225 GO:0005515
Trre9g00078 708 SMART arm_5 272 312 IPR000225 GO:0005515
Trre9g00078 708 Pfam BTB/POZ domain 535 637 IPR000210 GO:0005515
Trre9g00078 708 Coils Coil 12 35 - -
Trre9g00078 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 199 234 IPR000225 GO:0005515
Trre9g00078 708 Gene3D - 212 415 IPR011989 -
Trre9g00078 708 Gene3D Potassium Channel Kv1.1; Chain A 533 677 IPR011333 -
Trre9g00078 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 241 283 IPR000225 GO:0005515
Trre9g00078 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 367 IPR000225 GO:0005515
Trre9g00078 708 MobiDBLite consensus disorder prediction 1 28 - -
Trre9g00078 708 CDD BTB_POZ_ARIA_plant 529 644 - -
Trre9g00078 708 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 706 IPR044282 -
Trre9g00078 708 FunFam Armadillo/beta-catenin repeat family protein 533 677 - -
Trre9g00078 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 149 199 IPR000225 GO:0005515
Trre9g00078 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 94 150 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00078 Trre-Chr9 792766 801194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00078 201 419 U-box Gene Family AT3G46510 28.448 6.92e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre9g00078 BTB 4.6e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00078 - - gmx:100812456 1210.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00078 9 792766 801194 Trre9g00078 9 792766 801194 ECH
Trre9g00078 9 792766 801194 Trre1g05633 1 61668434 61676941 PCT