Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00074 ATGGAACAAGCACTTATCGGTGCACTCAACCTTGTATCTCGAAATCTTCCTCTTCCTCCCGAACTCTTCAACACCGTTGATTCGAGCAATTCTACTCAAGATGATGATTTATTGACAGAGCTTCAAGATGCTTTGTCTAAACAACGACCTAATTGTTCTTCAAGTTCTAAATTAAATAAAGCAATGCAAATTCGTACTCAATCTCGGATTCAGAATCGCTTAACTCAGCTTGAAGGGTTGCCTTCGAACTGGGGAGACAACCTGCAGACGAAGTGCTTGCTCGAGCTTTATGGATTAAAGCTAGCGGAGTTGCAAGGGAAGGTTCGAATGGAAGTGAATTCTGAATATATGCTTAATGTTAAATGTGCATATCCCGACAAGCAATTGTTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATAAAATAAGGAAGAAACGGGATGCTGAGAGACTATCTAGATTAGAAGAGCAAGCTAAAAGTGACATAGAGACCAGAACAAGAAGATTTTTTGCTGAAATACTGAATGCTGTCCGCGAGTTCCAGTTGCAAATTCAAGGTTCATTGAAGAGGAGAAAACAGAGGAATGATGCTGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACTCGGGCTGAGAAATTGAGATTCCAAGCTTTAAAGGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAAAATGAAAGACTAACTCTGCTTCTTGAAGAAACAAATAAATTGCTTGTAAATTTGGGAGCAGCGGTTCAACGTCAAAGAGACTCCAAACAATCAAATGGTATTGAACCCTTGGAAGATTCAGAAGCTGCGTTACCACAGTCAGATGCTTTGAAGAATGAAATTTCTAAGGAATCACCTCTTGAGGATGATGAGGATTTGATGGATTCTGATCATAATGATGACAGTAGTGATTTACTTGAAGGGCAACGGCAATACAATTCTACTATACATTCCATTCAAGAAAAGGTAACTGAGCAACCATCCATCCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTCAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCATTGATAGCATATCTTTTGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTAGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAATGAGTTCTCAACATGGGCTCCTAGCATTACAGCTGTTCTATACGACGGACGAATGGATGAGAGGAAAGCAATAAAGGAAGAACTGTCAGGGGAGGGGAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCTATTGGAAATACTTGATTGTTGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTTTAGCAAGAACCCTTGACTCTAGCTATCAAATTGAGCTAAGACTTCTGTTGACCGGAACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTTCTCCCAAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTGTCTTTAACAGATGAAGAACAATTATTGATTATTCGCCGTTTGCATCAGGTAATAAGGCCCTTCATACTAAGAAGGAAAAAGGCTGAGGTAGAGAAGTTTCTTCCCGGGAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACTGACGTGGGCAGAGTTGGGTTAGACAATGGTACTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGGAAGTGTTGTAACCATCCATACCTCTTTGTGGGAAACTATGATATATATAATCGTAAGGAGGAGATTGTCAGAGCATCGGGGAAATTTGAACTTCTTGACCGCTTGCTTCCTAAACTTCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAATTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCTCTTCTAAAGAAATTCAATGCTCCCGACTCTCCATACTTTATGTTTCTCTTAAGCACTCGTGCCGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAATCCACAAATGGATCAGCAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAGAAAGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCAGGCCTTTTCAACACAACGTCAACAGCCCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGTAGCTCACTTGGAACAGATGTGCCAAGTGAGAGAGAAATAAACCGCCTTGCAGCCCGGTCCGATGAGGAATTTTGGCTGTTCGAAAGAATGGACGAAGATAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGACAGAGCATGAACTGCCAGATTGGGTATACTCTGACCTAAATAAGGATGATAAGGCCAAAGCTTTTGACAGCAGTGGTATTACTGGAAAGAGGAAAAGAAAAGAAGTCGTATATGCAGATACATTAAGCGATCTACAATGGATGAAAGCTGTGGAAAGTGGACAGGATGTATCTAATCTTTCAGCTAAAGGAAAACGAAGAGTTCGCTTCCCTATTGACAGCCATGCGCAAACGAGTGATGACACCGGGGAAGAAGAAAGGTTGTTACAGTTGAGCAACACCGTGGCAAATGAGAGATCTGGTGAAGATACTTTCAATGCGACCCCTACCTCTAAGAGACTCAAGTATGAAGAAATAAGTTCCCATAAACATGGAATCGAAGATATCGGAGGAAGTGGTTTGAATGAGCATGCACTTTCCTGGAATACTCACAGAAAGAAGAGATCAAGCTATCTTAGTCAGGGTTCATTATCCGATACCAGAGGGCAGAATGCAAATGGAAGAAGAGCAAGCTAA 3180 0.4123 MEQALIGALNLVSRNLPLPPELFNTVDSSNSTQDDDLLTELQDALSKQRPNCSSSSKLNKAMQIRTQSRIQNRLTQLEGLPSNWGDNLQTKCLLELYGLKLAELQGKVRMEVNSEYMLNVKCAYPDKQLFDWGMMRLRRPPYGVGDPFAMDADDKIRKKRDAERLSRLEEQAKSDIETRTRRFFAEILNAVREFQLQIQGSLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLEDSEAALPQSDALKNEISKESPLEDDEDLMDSDHNDDSSDLLEGQRQYNSTIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLEYKGVTGPFLIVAPKAVLPNWVNEFSTWAPSITAVLYDGRMDERKAIKEELSGEGKFNVLITHYDLIMRDKAFLKKIYWKYLIVDEGHRLKNHECALARTLDSSYQIELRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMTEHELPDWVYSDLNKDDKAKAFDSSGITGKRKRKEVVYADTLSDLQWMKAVESGQDVSNLSAKGKRRVRFPIDSHAQTSDDTGEEERLLQLSNTVANERSGEDTFNATPTSKRLKYEEISSHKHGIEDIGGSGLNEHALSWNTHRKKRSSYLSQGSLSDTRGQNANGRRAS 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00074 1059 Pfam SNF2-related domain 361 649 IPR000330 GO:0005524|GO:0140658
Trre9g00074 1059 Gene3D - 326 582 IPR038718 -
Trre9g00074 1059 Pfam Snf2-ATP coupling, chromatin remodelling complex 871 936 IPR029295 GO:0042393
Trre9g00074 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 583 IPR027417 -
Trre9g00074 1059 SMART SnAC_2 875 936 IPR029295 GO:0042393
Trre9g00074 1059 FunFam Chromatin structure-remodeling complex protein SYD 349 592 - -
Trre9g00074 1059 Pfam Helicase conserved C-terminal domain 669 782 IPR001650 -
Trre9g00074 1059 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 370 536 IPR014001 -
Trre9g00074 1059 MobiDBLite consensus disorder prediction 1013 1059 - -
Trre9g00074 1059 FunFam Probable ATP-dependent DNA helicase CHR12 589 888 - -
Trre9g00074 1059 PANTHER SNF2/RAD54 HELICASE FAMILY 149 968 - -
Trre9g00074 1059 SMART ultradead3 354 547 IPR014001 -
Trre9g00074 1059 MobiDBLite consensus disorder prediction 1033 1059 - -
Trre9g00074 1059 MobiDBLite consensus disorder prediction 275 328 - -
Trre9g00074 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 837 IPR027417 -
Trre9g00074 1059 Gene3D - 589 888 IPR027417 -
Trre9g00074 1059 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 839 IPR001650 -
Trre9g00074 1059 CDD SF2_C_SNF 660 793 - -
Trre9g00074 1059 SMART helicmild6 698 782 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00074 Trre-Chr9 775952 783323 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00074 665 810 RAD5 or RAD16-like Gene Family AT5G43530 37.333 6.28e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre9g00074 SNF2_N 6.9e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00074 - - gmx:100775993 1744.17