Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00072 ATGCTTTTTCTCATCTTCATTTTCCTCTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTTCGCGTTCCTCTCGCTCTTCCAACAACAACAAGGGTTTTATTGGTAGTGAATTAGAGAGACCACTTGTTGAAGACGATGTAGTAAATGCTAATCAGCATAATGAATTACCTAGAGATTATGATCTTGAAGGTGTTGTTGGTGGTGATACTTTGATTGTTGATGTTATCTCTGATCATCATCATCATTCTGAAGATATTCATGTTGATGTTGATGTTGATGTTGATGTTGATGTTGGCCAAGTATTTAAGCTACCTCCTCCACCTCTTTTAGCTCAAATTCAAAAGCCTAACAGTAATTATCAGAATGATAGATTGCAAGATTTTGTGCAAAGAGATATCACTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATCAGTGGTCCTTCGTGTGGATTACGATGTTCTGTACAGTCGACAAATCCCTCTCGTCTACCGCTGACGTTGGGTAGGGTTTCTCCCAGTGATTTGTTGATAAAGGACTCGGAAGTTTCGGGAAAGCATGCTTTGATCAAGTGGAATTTGGATAATATGAAATGGGAGTTGGTGGATATGGGTAGCTTGAATGGAACACTTTTGAATTCTAAGTCAATCAACCATCCTGACACTGGAAGTAGGCATTGGGGAGATCCAATGAATCTTACTAATGGAGATGTTATAACTCTTGGAACAACATCAAAAATAATTGTTCATATTACTTCACAAAACCCTCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCCATGGCTTTGCGTCGAGGAGGAAAAAAACTTCCTATGGAGGATGTTTGCTATTATCAATGGCCTCTACCTGGACTGGATCAGTTTGGTCTTTTTGGCATTTGTGATGGGCACGGTGGTGATGGGGCTGCCAAATCTGCTAGCAAACTCTTTCCTGAGATAATTGCCAGTATATTATCGGATTCATCAAAAAGGGAGAGGGTTTTATCACTTCGTGATGCTTCAGATATCCTTCGAGATGCATTTTCTCAAACAGAAGCACGTATGAATAATTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGGCAGACCGTGATGATAATTTCTATGCACAATGTGCAAATGTTGGAGACTCTGAATGCATTATGAGTGTTAATGGCCAACAAATCAAGATGACAGAGGATCACAAAATAGCAAATTATTCTGAAAGACTAAGAATTGAAGGGACCGGTGAACCATTAAAAGAAGGGGAAACCCGACTATATGGTATAAATCTTGCAAGGATGCTTGGGGACAAATTCCTAAAGCAGCAGGATTCCCGATTCAGTTCTGAACCTTACATAAGTGAGCCTGTGCATATTCACCCAGCAAGCAAAGCTTTTGTTGTTCTGGCTAGTGATGGGCTATGGGATGTCGTCAGCATGAAGAAGGCGATTCAGCTAGTGCTCCAGACGAGGGAGCGATACAATACAGATAGAGAGAATACAGCAGAAAAGATTGCTAGTTTGTTGTTGAGTGAGGCTAGAACACTCAAAACAAAGGATAATACCTCCATAATATTCTTAGATTTTGATATCTCCAATAGTTTCTCTTGTAAAGTTGAATCCTAG 1644 0.4027 MLFLIFIFLFFLFKPWRFFFSSRSSRSSNNNKGFIGSELERPLVEDDVVNANQHNELPRDYDLEGVVGGDTLIVDVISDHHHHSEDIHVDVDVDVDVDVGQVFKLPPPPLLAQIQKPNSNYQNDRLQDFVQRDITDQRSCLTLEVISGPSCGLRCSVQSTNPSRLPLTLGRVSPSDLLIKDSEVSGKHALIKWNLDNMKWELVDMGSLNGTLLNSKSINHPDTGSRHWGDPMNLTNGDVITLGTTSKIIVHITSQNPHHIPFGVGMASDPMALRRGGKKLPMEDVCYYQWPLPGLDQFGLFGICDGHGGDGAAKSASKLFPEIIASILSDSSKRERVLSLRDASDILRDAFSQTEARMNNYYEGCTATVLLVWADRDDNFYAQCANVGDSECIMSVNGQQIKMTEDHKIANYSERLRIEGTGEPLKEGETRLYGINLARMLGDKFLKQQDSRFSSEPYISEPVHIHPASKAFVVLASDGLWDVVSMKKAIQLVLQTRERYNTDRENTAEKIASLLLSEARTLKTKDNTSIIFLDFDISNSFSCKVES 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00072 547 Gene3D - 135 267 - -
Trre9g00072 547 Pfam Protein phosphatase 2C 274 528 IPR001932 -
Trre9g00072 547 CDD PP2Cc 275 535 IPR001932 -
Trre9g00072 547 FunFam Protein phosphatase 2C 70 136 270 - -
Trre9g00072 547 ProSiteProfiles Forkhead-associated (FHA) domain profile. 167 218 IPR000253 GO:0005515
Trre9g00072 547 SUPERFAMILY PP2C-like 276 536 IPR036457 -
Trre9g00072 547 CDD FHA_PP2C70-like 141 251 - -
Trre9g00072 547 FunFam Protein phosphatase 2C 70 271 542 - -
Trre9g00072 547 Pfam FHA domain 168 243 IPR000253 GO:0005515
Trre9g00072 547 SMART FHA_2 166 218 IPR000253 GO:0005515
Trre9g00072 547 Gene3D - 268 540 IPR036457 -
Trre9g00072 547 SMART PP2C_4 257 533 IPR001932 -
Trre9g00072 547 ProSiteProfiles PPM-type phosphatase domain profile. 263 535 IPR001932 -
Trre9g00072 547 PANTHER PROTEIN PHOSPHATASE 2C 274 531 IPR015655 GO:0004722|GO:0006470
Trre9g00072 547 ProSitePatterns PPM-type phosphatase domain signature. 300 308 IPR000222 GO:0043169
Trre9g00072 547 SUPERFAMILY SMAD/FHA domain 139 250 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00072 Trre-Chr9 762666 768210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00072 11 538 PP2C-type Phosphatase Gene Family AT5G19280 55.106 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00072 K01090 - gmx:100170643 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00072 9 762666 768210 Trre9g00072 9 762666 768210 ECH