Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00071 ATGGAACATACGATGCTTCAAACCATTGTGACTGTGCTTCTTCTCCTTATGCTTTTTCTCATCTTCATTTTCCTCTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTTCGCGTTCCTCTCGCTCTTCCAACAACAACAAGGGTTTTATTGGTAGTGAATTAGAGAGACCACTTGTTGAAGACGATGTAGTAAATGCTAATCAGCATAATGAATTACCTAGAGATTATGATCTTGAAGGTGCGTGTTATCCTAATGAACTTAATTTTCGTTCTCCAAGAACACATGGACAAGGACTTATTCATAAACAAAGGCTTCATAATCACTCTGTTTCACCTAATTTTCCACAAGGTGTTGTTGGTGGTGATACTTTGATTGTTGATGTTATCTCTGATCATCATCATCATTCTGAAGATATTCATGTTGATGTTGATGTTGATGTTGATGTTGATGTTGGCCAAGTATTTAAGCTACCTCCTCCACCTCTTTTAGCTCAAATTCAAAAGCCTAACAGTAATTATCAGAATGATAGATTGCAAGATTTTGTGCAAAGAGATATCACTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATCAGTGGTCCTTCGTGTGGATTACGATGTTCTGTACAGTCGACAAATCCCTCTCGTCTACCGCTGACGTTGGGTAGGGTTTCTCCCAGTGATTTGTTGATAAAGGACTCGGAAGTTTCGGGAAAGCATGCTTTGATCAAGTGGAATTTGGATAATATGAAATGGGAGTTGGTGGATATGGGTAGCTTGAATGGAACACTTTTGAATTCTAAGTCAATCAACCATCCTGACACTGGAAGTAGGCATTGGGGAGATCCAATGAATCTTACTAATGGAGATGTTATAACTCTTGGAACAACATCAAAAATAATTGTTCATATTACTTCACAAAACCCTCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCCATGGCTTTGCGTCGAGGAGGAAAAAAACTTCCTATGGAGGATGTTTGCTATTATCAATGGCCTCTACCTGGACTGGATCAGTTTGGTCTTTTTGGCATTTGTGATGGGCACGGTGGTGATGGGGCTGCCAAATCTGCTAGCAAACTCTTTCCTGAGATAATTGCCAGTATATTATCGGATTCATCAAAAAGGGAGAGGGTTTTATCACTTCGTGATGCTTCAGATATCCTTCGAGATGCATTTTCTCAAACAGAAGCACGTATGAATAATTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGGCAGACCGTGATGATAATTTCTATGCACAATGTGCAAATGTTGGAGACTCTGAATGCATTATGAGTGTTAATGGCCAACAAATCAAGATGACAGAGGATCACAAAATAGCAAATTATTCTGAAAGACTAAGAATTGAAGGGACCGGTGAACCATTAAAAGAAGGGGAAACCCGACTATATGGTATAAATCTTGCAAGGATGCTTGGGGACAAATTCCTAAAGCAGCAGGATTCCCGATTCAGTTCTGAACCTTACATAAGTGAGCCTGTGCATATTCACCCAGCAAGCAAAGCTTTTGTTGTTCTGGCTAGTGATGGGCTATGGGATGTCGTCAGCATGAAGAAGGCGATTCAGCTAGTGCTCCAGACGAGGGAGCGATACAATACAGATAGAGAGAATACAGCAGAAAAGATTGCTAGTTTGTTGTTGAGTGAGGCTAGAACACTCAAAACAAAGGATAATACCTCCATAATATTCTTAGATTTTGATATCTCCAATAGTTTCTCTTGTAAAGTTGAATCCTAG 1803 0.4004 MEHTMLQTIVTVLLLLMLFLIFIFLFFLFKPWRFFFSSRSSRSSNNNKGFIGSELERPLVEDDVVNANQHNELPRDYDLEGACYPNELNFRSPRTHGQGLIHKQRLHNHSVSPNFPQGVVGGDTLIVDVISDHHHHSEDIHVDVDVDVDVDVGQVFKLPPPPLLAQIQKPNSNYQNDRLQDFVQRDITDQRSCLTLEVISGPSCGLRCSVQSTNPSRLPLTLGRVSPSDLLIKDSEVSGKHALIKWNLDNMKWELVDMGSLNGTLLNSKSINHPDTGSRHWGDPMNLTNGDVITLGTTSKIIVHITSQNPHHIPFGVGMASDPMALRRGGKKLPMEDVCYYQWPLPGLDQFGLFGICDGHGGDGAAKSASKLFPEIIASILSDSSKRERVLSLRDASDILRDAFSQTEARMNNYYEGCTATVLLVWADRDDNFYAQCANVGDSECIMSVNGQQIKMTEDHKIANYSERLRIEGTGEPLKEGETRLYGINLARMLGDKFLKQQDSRFSSEPYISEPVHIHPASKAFVVLASDGLWDVVSMKKAIQLVLQTRERYNTDRENTAEKIASLLLSEARTLKTKDNTSIIFLDFDISNSFSCKVES 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00071 600 PANTHER PROTEIN PHOSPHATASE 2C 327 584 IPR015655 GO:0004722|GO:0006470
Trre9g00071 600 SUPERFAMILY PP2C-like 329 589 IPR036457 -
Trre9g00071 600 SMART PP2C_4 310 586 IPR001932 -
Trre9g00071 600 Pfam FHA domain 221 296 IPR000253 GO:0005515
Trre9g00071 600 Gene3D - 188 320 - -
Trre9g00071 600 CDD FHA_PP2C70-like 194 304 - -
Trre9g00071 600 SMART FHA_2 219 271 IPR000253 GO:0005515
Trre9g00071 600 ProSitePatterns PPM-type phosphatase domain signature. 353 361 IPR000222 GO:0043169
Trre9g00071 600 Gene3D - 321 593 IPR036457 -
Trre9g00071 600 Pfam Protein phosphatase 2C 327 581 IPR001932 -
Trre9g00071 600 ProSiteProfiles Forkhead-associated (FHA) domain profile. 220 271 IPR000253 GO:0005515
Trre9g00071 600 ProSiteProfiles PPM-type phosphatase domain profile. 316 588 IPR001932 -
Trre9g00071 600 SUPERFAMILY SMAD/FHA domain 192 303 IPR008984 GO:0005515
Trre9g00071 600 CDD PP2Cc 328 588 IPR001932 -
Trre9g00071 600 FunFam Protein phosphatase 2C 70 189 323 - -
Trre9g00071 600 FunFam Protein phosphatase 2C 70 324 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00071 Trre-Chr9 762618 768210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00071 27 591 PP2C-type Phosphatase Gene Family AT5G19280 55.688 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00071 K01090 - gmx:100170642 842.417