Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00065 ATGTTTGGTTCTTCTTCTTCTTCTTCCCAACACAATCACATTATGGATAATATGTTTTTTGAAGATGAGGTGCCAAGGGCAAGAGATGAACGTTACAAAATCGAATTTGGAGGTTCATCAAGACCAAGTGATGAACAACAACATCAACAACAACCAAACCAACAAGAAGAACAAACCAACCAATGTTCCAAAAAAAGGAGCTATCGCCGCCACACACAGGAGCAAATCGAAGAACTGGATGCTTTCTTTAAGCGGAATGCTCACCCAGATGAGAGGGAAAGAAAAGAGTTGGGCCGTCGGCTTGGGTTAGATCCTTCGCAAATCAAGTTCTGGTTTCAAAACAGGCGCACTTGTCTAAAGGTGAGAAGTGAAAGAGAAGAGAATGATTTTTTGAAGGCAGAGATTGAAAAGCTTCGAGCTGAGTTGAATAGGTTCAAAGAGACTCCAACTACATGCAATGTGTGTGGAACCCCGACTGCCCTTGTGATGTCCAATGAGCAGCAACAATTGAGATTGGAGAATGCTTTGTTAAAAAAAGAGCTTGAAAGATTTGGAGCCCAAATACTGACAAATCATGGCGATTCCTATAACAACATATCATCATCAGTATTGAATAGCAATCAAGGACCTTCACATTCTATTGATGTTGGTCTTGGAGTTGAACTTGTTGGTAACTACAATGGAGCAATGAAAGGTTTTGTAGGAGAAACAAATGTTGGTGGTAGTGGCACTGGTCGTGAGCTTGTTAGATACTCTGCTCTAGCTGAAGAAGGTCTTGATGATAACAAGATTGTTGAGTTAGCTGTTGTCGGAATGGATGAACTAATAAGATTGGATCAGACTTGTGGACCCCCTATGTGGTTCTCGACCAATTATCTTACCGAGATTCTAAATGGAGAGGAATATATGTTGCAATTTCCTAGGAGTATTGTTCCTAACCAAATGGAGTTAAGACATGATGGTTCTAAAGAATCGGTTGTGGTTTTCATGAATCCTATTAGTTTGGTTGATATCCTTATGGATGTGAGTCGATGGTCAAATATGTTTTGCGGAATTGTTTCAAGAGCTGCAACACTCAAAGTCCTTTCAACTGGAGTGGCAGGAAATTATGACGGAGCCTTGCAATTGATGTCAGCTGAATTTCAGGTTGCTTCACCATCTATTCCTACTCTTGAAAGTTATTTCGTGAGATACTGTAAACTTCTTCCAAATCGGATATGGGTAGTGGCCGATGTTCCCTTGAATAATTTTTCACCTTCATCTAGTAGTTCTATTTTAAGAACAAAAAGAAGAGTTTCTGGTTGTTTAATTCAAGAACTACCACATGGTTACTCTAACGTTACATGGATTGAACATTTAGAAGTTAATGATAATGAGGTACAAACTATATATACACCTCTAATTAATTCTGGACTTGCATTTGGAGCTAAACGTTGGATAGCTATACTACAAAGACAATGCGAACGTCTTGTTTGTTCGATGTCGAGCAACATACCTATTACAGGGAACATTGGCGTGAGTATGACTCATGCGGGAAAGGAAAGTATGTTGAGGTTAGCAGGAAGAATGGTAACCAGTTTCTGTACTAGTATTGGTGCTTCTACGGCTCATGCTTGGACAAATCTACCATCAAACGGGTCCGAGGAAATAAAAGTCATGACTAGAAAATATACCGATGAATCGGGCAGTGACAGACCCTCTGATGTAGTGCTAAGTACTGCTACTTCTTTCTGGCTTCCCATTCCTCCAAAAAGGGTTTTTGAGTTTCTTCGTAACGAGAACTCAAGAAGTCAGTGGGATATTCTCTCCACCGGATGTACAATTGAAGATGTGGCTAACATTGCCAATGGTTGTGATCCTGGCAATTGTGTTTCTTTACTTCGTGTCCGTAGTGGAAATACAAGTCAGAGTAATAGGGTGGTACTACAAGAGAGTTGCACTGATATAACTGGCTCATATGTAGTATATGCACCTGTGGATGTAATTGCAATGAATGCAGTATTATGTGGTGGAGACTCAAATTGTGTTGCTATGATTCCTTCTGGATTTGCTATTCTTCCAGATGGAGGACCAATTATGAATATTGGATCTGGAGGTTCTCTTATCACAGTTGGATTTCAGATTTTAGTTGATTCTGTTCCACATACAAGACTAGCTTTGGGTTCAGTCTCCACTGTTAACAATTTGCTCAAGGCCACTGTGAAAAGGATTAAAGTTGCATTGATGCCTAATGACACCTAA 2241 0.3998 MFGSSSSSSQHNHIMDNMFFEDEVPRARDERYKIEFGGSSRPSDEQQHQQQPNQQEEQTNQCSKKRSYRRHTQEQIEELDAFFKRNAHPDERERKELGRRLGLDPSQIKFWFQNRRTCLKVRSEREENDFLKAEIEKLRAELNRFKETPTTCNVCGTPTALVMSNEQQQLRLENALLKKELERFGAQILTNHGDSYNNISSSVLNSNQGPSHSIDVGLGVELVGNYNGAMKGFVGETNVGGSGTGRELVRYSALAEEGLDDNKIVELAVVGMDELIRLDQTCGPPMWFSTNYLTEILNGEEYMLQFPRSIVPNQMELRHDGSKESVVVFMNPISLVDILMDVSRWSNMFCGIVSRAATLKVLSTGVAGNYDGALQLMSAEFQVASPSIPTLESYFVRYCKLLPNRIWVVADVPLNNFSPSSSSSILRTKRRVSGCLIQELPHGYSNVTWIEHLEVNDNEVQTIYTPLINSGLAFGAKRWIAILQRQCERLVCSMSSNIPITGNIGVSMTHAGKESMLRLAGRMVTSFCTSIGASTAHAWTNLPSNGSEEIKVMTRKYTDESGSDRPSDVVLSTATSFWLPIPPKRVFEFLRNENSRSQWDILSTGCTIEDVANIANGCDPGNCVSLLRVRSGNTSQSNRVVLQESCTDITGSYVVYAPVDVIAMNAVLCGGDSNCVAMIPSGFAILPDGGPIMNIGSGGSLITVGFQILVDSVPHTRLALGSVSTVNNLLKATVKRIKVALMPNDT 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00065 746 Pfam Homeodomain 65 117 IPR001356 GO:0003677
Trre9g00065 746 SUPERFAMILY Homeodomain-like 51 120 IPR009057 -
Trre9g00065 746 CDD START_ArGLABRA2_like 264 488 - -
Trre9g00065 746 SMART START_1 266 489 IPR002913 GO:0008289
Trre9g00065 746 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g00065 746 SMART HOX_1 64 126 IPR001356 GO:0003677
Trre9g00065 746 Pfam START domain 285 489 IPR002913 GO:0008289
Trre9g00065 746 FunFam Homeobox-leucine zipper protein HDG1 49 138 - -
Trre9g00065 746 SUPERFAMILY Bet v1-like 321 489 - -
Trre9g00065 746 Coils Coil 167 187 - -
Trre9g00065 746 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 741 IPR042160 -
Trre9g00065 746 MobiDBLite consensus disorder prediction 16 38 - -
Trre9g00065 746 ProSiteProfiles START domain profile. 285 492 IPR002913 GO:0008289
Trre9g00065 746 MobiDBLite consensus disorder prediction 1 70 - -
Trre9g00065 746 Gene3D - 47 136 - -
Trre9g00065 746 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Trre9g00065 746 MobiDBLite consensus disorder prediction 40 61 - -
Trre9g00065 746 CDD homeodomain 65 116 IPR001356 GO:0003677
Trre9g00065 746 SUPERFAMILY Bet v1-like 511 738 - -
Trre9g00065 746 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00065 Trre-Chr9 686687 691625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00065 50 741 Homeobox Transcription Factor Family AT4G04890 55.556 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre9g00065 START 2.5e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00065 K09338 - qsu:112016283 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00065 9 686687 691625 Trre9g00065 9 686687 691625 ECH