LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g00060	ATGGAAAAAGATAGAATTTCTTCAGCTATGATCATTATGTTAATCATTTTAATGTTAAAATCTGTCAAATTTGTTTCTGGTACAGAAAATCTTATAGATACCTATTGTCCAGATAATTTCCCACTTTACACTTCCAACACTTCATTCCACAAGAATCTCAAGCTTCTCATGGAAACTCTATCCTCAAACATAGTAGCTTCAAACACAAGTTTCTTCAACAATACATCAACAGGAGAAGGACTAGATAAAGTGTATGGACAAGCACTATGTAGAGGTGACATAACAAACTCAACAGTTTGCAAAGAATGCATTGAGAAAGCAAGCAAAGATTTAATGAAAAGGTGTAAGAGTGAAGATGCGATGATATGGTACGACCTTTGTCAAGTTCGGTACTCGTTTCAGATGTTTTTCTCAAACGCGGTTTATACTGGAAAATATCCAAAGCAGAATGATCTAGAGAAGCGCGTCACGGATCCTACTAGTTTCCAACAAGTGTTAACTTATTTAATGAACAATCTCTCAAATGAGGCTGCTTTCAATCCTGCTAAGAACATGTTCGCAACTGCAGATATCGAATTTTCTAAGAAGAAAAAGGCTAGAATATATGGACTCGTCGAATGTACGAAGGACATTTCTGAAACGGACTGCAAGAGTTGTTTGAGTTCTGCAATCACAGAACTCAATGCATGCTGCTCATACAGGGAAGGAGGGATTATTGTTAGTCGAAATTGCAACGTAAGATTCGATCTGTTTGAGTTTTTCAATGCTTCTTCATCAGCAGCACCCCTTTTGATTTTCCCAACTTCCAAAGGAGGGAAATGGAAGCCTTGGATGTTTGTGTTGACTATATGTGGCTCAATTTTGATAATAGCAGTTCTTATTGTGTTTTGCATCGCTTGCGTCCGGCAGAAAAAGGACAGAGACAAAGAAGAAGAAAGAAGCGAAAGGACGCTATTACAAGAGTTGGCTAGCCCCAAGAATGTAGCAATCACACAAGAAGGTGAGTTGATTAGTTCTGATCAACTGTTCATGACTTTAGCAACCATTAAGGCGGCTACCGGCAACTTTTCTGATACAAATAAGCTTGGACAAGGAGGTTTTGGTACAGTCTACAAGGGTGTTCTACCAGATGGTAATGAAATAGCAGTTAAAAGATTGTCAAGAAAATCTTGGCAGGGCTTAGAAGAATTCAAAAATGAGGTTATTTTAATAGCTAAACTTCAACACAAAAATTTGGTGAAGTTGTTAGGTTGTGTCTTAGAAGGAGACGAAAAGATACTCATATATGAACTCATGTCAAACAGAAGCCTTGATCAATTTATATTCGATCCATACAAACGTCCTAAACTTGATTGGAAGACATGTTATGGCATCATCGGCGGCTTAGCAAAAGGACTTCTTTATCTGCATGAGGAGTCTCGGCTTAAAATCATTCACCGAGACCTAAAGCCAAACAATGTGTTGTTAGACCATGAACTAGTAGCCAAAATATCAGATTTTGGTATGGCCAGAATGTTTTCCGAGAATCAAAATACAGCAAACACAAAAAGGGTTGTGGGAACACATGGATATATGGCTCCAGAATATGCAATGGAAGGACTATTCTCCGTGAAATCTGATGTCTTCAGCTTTGGTGTAATCATGCTTGAAATCATCAGTGGAAAAAGAAATAACGGCTTTTACACAACCAAACTTGCGCCAACTTTGCTGGCACATGCTTGGCGACTGTGGAATGAAGGAAACGGATTAGAAGTTGTGGATCCTATATTACTAGTATCGTGTCTTGATTCTGAATATGAAGTTCTTAGGTGCGTTCATATTGCGCTCCTGTGTGTGCAGGAAGATCCGCAACACAGGCCGACCATGTCAAATGTTGTAGTTCTACTAGGAAGTGAATCAATGACTCTTCCCCAACCAAGACAACCAGCATTTTCATCGGGTAAGGCGATTCACGTAGATCCTACTGCATCAATAAATCATTCAGTGAATGAGAGTCTATGGTCTAGTGTTACACCACGATGA	2022	0.3897	MEKDRISSAMIIMLIILMLKSVKFVSGTENLIDTYCPDNFPLYTSNTSFHKNLKLLMETLSSNIVASNTSFFNNTSTGEGLDKVYGQALCRGDITNSTVCKECIEKASKDLMKRCKSEDAMIWYDLCQVRYSFQMFFSNAVYTGKYPKQNDLEKRVTDPTSFQQVLTYLMNNLSNEAAFNPAKNMFATADIEFSKKKKARIYGLVECTKDISETDCKSCLSSAITELNACCSYREGGIIVSRNCNVRFDLFEFFNASSSAAPLLIFPTSKGGKWKPWMFVLTICGSILIIAVLIVFCIACVRQKKDRDKEEERSERTLLQELASPKNVAITQEGELISSDQLFMTLATIKAATGNFSDTNKLGQGGFGTVYKGVLPDGNEIAVKRLSRKSWQGLEEFKNEVILIAKLQHKNLVKLLGCVLEGDEKILIYELMSNRSLDQFIFDPYKRPKLDWKTCYGIIGGLAKGLLYLHEESRLKIIHRDLKPNNVLLDHELVAKISDFGMARMFSENQNTANTKRVVGTHGYMAPEYAMEGLFSVKSDVFSFGVIMLEIISGKRNNGFYTTKLAPTLLAHAWRLWNEGNGLEVVDPILLVSCLDSEYEVLRCVHIALLCVQEDPQHRPTMSNVVVLLGSESMTLPQPRQPAFSSGKAIHVDPTASINHSVNESLWSSVTPR	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g00060	673	SMART	serkin_6	356	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g00060	673	ProSiteProfiles	Gnk2-homologous domain profile.	144	253	IPR002902	-
	Trre9g00060	673	Gene3D	Transferase(Phosphotransferase) domain 1	432	638	-	-
	Trre9g00060	673	Pfam	Protein tyrosine and serine/threonine kinase	359	627	IPR001245	GO:0004672\|GO:0006468
	Trre9g00060	673	Gene3D	-	147	253	IPR038408	-
	Trre9g00060	673	Gene3D	-	29	136	IPR038408	-
	Trre9g00060	673	CDD	STKc_IRAK	362	626	-	-
	Trre9g00060	673	FunFam	Cysteine-rich receptor-like protein kinase 10	147	253	-	-
	Trre9g00060	673	ProSiteProfiles	Protein kinase domain profile.	356	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g00060	673	ProSiteProfiles	Gnk2-homologous domain profile.	31	136	IPR002902	-
	Trre9g00060	673	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	321	431	-	-
	Trre9g00060	673	Gene3D	Phosphorylase Kinase; domain 1	317	431	-	-
	Trre9g00060	673	ProSitePatterns	Protein kinases ATP-binding region signature.	362	384	IPR017441	GO:0005524
	Trre9g00060	673	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	33	651	-	-
	Trre9g00060	673	FunFam	Uncharacterized protein	432	635	-	-
	Trre9g00060	673	Pfam	Salt stress response/antifungal	42	133	IPR002902	-
	Trre9g00060	673	Pfam	Salt stress response/antifungal	156	249	IPR002902	-
	Trre9g00060	673	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	477	489	IPR008271	GO:0004672\|GO:0006468
	Trre9g00060	673	SUPERFAMILY	Protein kinase-like (PK-like)	340	628	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g00060	Trre-Chr9	643908	646582	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g00060	32	644	Receptor kinase-like Gene Family	AT4G23230	43.243	6.24e-173	506

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre9g00060		PK_Tyr_Ser-Thr	1.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g00060	-		-	adu:107488598	930.243