Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00059 ATGATTCATCATTTTACAGTTTCCAAATCCATTAAATTCTTCTTTCTTTTTTGTATTCTTGCATTCTTTTCATATGCTACCTTTGCAGATCCTCCATATGAAGTTTGTTCCACAAGAAACATCTCTGCAAATCAAAGTTCCTTTCAGAACAATCTAAGTAACCTCCTTCTTTCTTTACCCTCTAATGTTTCAACTTCAATCTCCAAATTTGGCAATACTTCTTCAGGAATTGGCTTAGATAGAGTTTATGGACTCTACATGTGCCTCGACTTTGTTTCGAACCAAACATGCCACAAATGCGTAACAAACGCAATATCAGACATTGTAAAACTCTGTCCTCAATCAGAAGAAGCGGTCGTGTATGAAGAGTTCTGTCAATTACGTTATTCGAATAAAAATTTCATCGGCTCTTTAGATGTCACAGACAACATTGGTAAAGATAATGTTCAAAATATTTCAGAACCGGAGAAGTATGAATCTGTTGTGAATAAGATATTGAATAATCTTACAGAGATAGCGTCTTTTAATGTTTCTTCGATTATGTATGCTACCGGAGAAGTAAACTTCGAAGATAAAACAATATACGCGTTAGTACAGTGTACTAGAGATTTATCAGACACTAATTGCAGTAGGTGTTTGCTAAGTGCTATAAGAGATATACCAGATCAAACAAGTTCTTCAACCAACCAAGAAAAGAAAAATAATTCAAGCAAAATATGGATAATTGCATCCATTGCAGCTGGGATAGGCTTGGTGATAATCATTTTTATTTGCTACTTGTGTTTTGTCAGGAACAAAAGAATTTGGCAAAGTAGCAAAGTTTCTAAGGATTTCCCTTTTTTTGATCTTGGATCTCTTTGTGTGGCTACCGATAACTTCTCCGATTCAAATATGCTTGGGCAAGGTGGATTTGGGCCTGTTTACAAAGGTATACTTAGTGATGGCATGGAAGTAGCAATCAAGAGGCTTTCAACTTGTTCTGAGCAGGGTTCGGAGGAATTCATTAACGAGGTTATGCTGATATTGAAGCTTCAACACAAAAATCTTGTGAAGCTTTTGGGATTTTGTGTTGATGGAGAAGAGAAGCTTCTTGTTTATGAATATTTGCCTAATGGTAGCCTTGATGTCGTCCTTTTTGAGCAAAGTGCACAGCTCGATTGGACGAAACGAGTTGATATAGTAAATGGAATAGCAAGGGGAATTCTTTATCTTCATGAAGATTCTAGACTTCAAATAATACATCGAGATCTAAAAGCAAGTAACGTGTTGTTGGATTATGACATGAATCCAAAGATTTCAGACTTTGGAATGGCAAGAATATTTGCAGGAAGTGAAGGTGAAGCTAACACTGCTACAATAGTTGGCACATATGGATATATGGCTCCGGAGTATGCAATGGAGGGTATATATTCCATAAAATCTGATGTTTTCGGTTTTGGAGTACTATTGCTCGAGATCATTACAGGGAAACGTAACACAGGTTTCTATTACTCCAAAACCACTCCTAGCCTTCTAGCATATGCATGGCATCTATGGAATGATGGAAAAGGATTAGAGTTAATGGATCCGTTGTTATTATGCCCGGGAGACCAGTTTTTGAGATACATGAATATTGGACTATTATGTGTTCAAGCAGATGCATTTGATAGGCCAACCATGTCTTCTGTGGTTTTGATGTTGATGAATGAATCTGTAATGCTCGGCCTGCCAGAAAAGCCTCCTTTCTCTGTAGGCAGACTCAATGTTAATGATCAGAATGTGCTAGATTCGGAAGATTGCTCAGTCGATTATAATTTTTTAACTGTTTCTGATATCTTGCCCCTGCAATGA 1830 0.3699 MIHHFTVSKSIKFFFLFCILAFFSYATFADPPYEVCSTRNISANQSSFQNNLSNLLLSLPSNVSTSISKFGNTSSGIGLDRVYGLYMCLDFVSNQTCHKCVTNAISDIVKLCPQSEEAVVYEEFCQLRYSNKNFIGSLDVTDNIGKDNVQNISEPEKYESVVNKILNNLTEIASFNVSSIMYATGEVNFEDKTIYALVQCTRDLSDTNCSRCLLSAIRDIPDQTSSSTNQEKKNNSSKIWIIASIAAGIGLVIIIFICYLCFVRNKRIWQSSKVSKDFPFFDLGSLCVATDNFSDSNMLGQGGFGPVYKGILSDGMEVAIKRLSTCSEQGSEEFINEVMLILKLQHKNLVKLLGFCVDGEEKLLVYEYLPNGSLDVVLFEQSAQLDWTKRVDIVNGIARGILYLHEDSRLQIIHRDLKASNVLLDYDMNPKISDFGMARIFAGSEGEANTATIVGTYGYMAPEYAMEGIYSIKSDVFGFGVLLLEIITGKRNTGFYYSKTTPSLLAYAWHLWNDGKGLELMDPLLLCPGDQFLRYMNIGLLCVQADAFDRPTMSSVVLMLMNESVMLGLPEKPPFSVGRLNVNDQNVLDSEDCSVDYNFLTVSDILPLQ 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00059 609 Gene3D Phosphorylase Kinase; domain 1 259 368 - -
Trre9g00059 609 ProSiteProfiles Gnk2-homologous domain profile. 140 246 IPR002902 -
Trre9g00059 609 Pfam Protein tyrosine and serine/threonine kinase 297 557 IPR001245 GO:0004672|GO:0006468
Trre9g00059 609 SUPERFAMILY Protein kinase-like (PK-like) 269 560 IPR011009 -
Trre9g00059 609 Pfam Salt stress response/antifungal 150 224 IPR002902 -
Trre9g00059 609 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Trre9g00059 609 FunFam Cysteine-rich receptor-like protein kinase 10 263 368 - -
Trre9g00059 609 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Trre9g00059 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Trre9g00059 609 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 369 568 - -
Trre9g00059 609 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 581 - -
Trre9g00059 609 Gene3D Transferase(Phosphotransferase) domain 1 369 566 - -
Trre9g00059 609 SMART serkin_6 293 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00059 609 CDD STKc_IRAK 299 562 - -
Trre9g00059 609 ProSiteProfiles Protein kinase domain profile. 293 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00059 609 Gene3D - 143 240 IPR038408 -
Trre9g00059 609 Gene3D - 30 134 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00059 Trre-Chr9 640272 642846 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00059 5 575 Receptor kinase-like Gene Family AT4G05200 40.472 8.61e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre9g00059 PK_Tyr_Ser-Thr 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00059 - - gmx:102669364 798.119