Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00058 ATGTGCAGAGGTGACGTGTCACTCCCTCTCTGCCGACAGTGCGTTCTAAACGCAACACAGACACTCTTTTCAGAATGTTCCCTTTCTAAACAGGCAGTTATATGGTACGACGAGTGCACCGTACGCTACTCAAACCGTTCTTTTTTCTCCACCTTTGATACTAGACCTCGTGTTGGTCTACTCAACACAGCAAACATAACCAACCAAAAAAGCTTCATGCGTTTATTGTTTCAAACAATGAACAAAACTGCTGATGATGCTTCTAATCATCCTATTGGTTCTAAGAAATATGCAACAAATCAAGCTACTATATCTGGATTTCAGAATTTGTATTGTTTGGCTCAGTGTACCCCTGATTTGTCTCCTCAAGATTGTAGAAAGTGTCTTGGTAGTGTCATTGGGGATCTTCCTTGGTGTTGTATGGGAAAACAAGGTGGAAGGGTTTTATATCCTAGCTGTAATGTTAGATATGAATTGTACCCTTTTTTTCGCGTAGACAATGTTTCGTCTCCGTCTCCTTCATCGTCAATTCTTCCTCCTGCAACTACTAATTCAGCTGATTCCCGAGGAGGAAGCAGTGGGATATCAGGTGGGACAATTGTTGCAATTGTAGTTCCAATCATAGTTGTTGTGCTTCTGTTTATTGTGGCCATTTGTTTCTTGAGTAAAAGGGCAAGGAAGAAGCATGATTCTCTACAAGATGGAAACACTGCAAATGATATCACCAGTATGGAGTCCTTACAATTTGATTTCGGCACCATTGAAGCAGCCACCAACAAATTCTCTGCAGATAATAAGTTAGGTGAAGGTGGATTTGGTGAAGTTTTTAAGGGAACTCTTCCAAGTGGACAAGAAATAGCTGTCAAAAGACTCTCCAAAAGTTCTGGACAAGGTGGAGCAGAATTTAAGAATGAAGTTGTTGTAGTTGCCAAGCTTCAGCACAGAAATTTGGCTAGGCTTCTTGGATTTTGTTTGCAAGGAGAGGAAAAGATACTTGTTTATGAATATGTAGCCAACAAAAGTTTGGACTATACTCTATTTGATCCCGAAAAGCAAGGGAGACTAGATTGGGCAAGGCGGTACAGGATTATTGGAGGCATTGCTCGAGGCATGCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACACCGTGATCTTAAAGCTAGCAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCGGATTTTGGCATGGCAAGAATAGTTGGAGTTGATCAAACTCAAGGAAACACTAGCAGAATTGTAGGAACTTACGGTTACATGGCTCCAGAGTATGCAATGCATGGAGAATTTTCAGTAAAGTCTGATGTATACAGTTTTGGAGTTCTCGTTATGGAGATTATAAGTGGCAAGAAAAATAGCTCTTTCTATGACACCGATGGTGCTGATGATCTAGTGAGCTATACATGGAAAGTTTGGATAGAAGGAGCACCATTAGAACTAGTGGACCCTATATTAAGAGAAAAAATTACTCCAAATGAAGTTATCAGAAGCATTCATATTGGTTTGCTTTGTGTTCAAGAAGATCCAAGTGACAGACCAACAATGGCATCAATAGTTCTTATGCTTGACAGTAACACAGTTACTCTTCCAACTCCGAAGCAGCCTGCATTTTTCATCAACAGTATTGCAACTGATCCAAACAGGCCAAAGGAGCTGCGATTTGATTCTTCTACAACAAAGTCAATAACAAGTTCTGTGAATGAGATGTCAATTAGTGAAATGGATCCGCGATAA 1764 0.3997 MCRGDVSLPLCRQCVLNATQTLFSECSLSKQAVIWYDECTVRYSNRSFFSTFDTRPRVGLLNTANITNQKSFMRLLFQTMNKTADDASNHPIGSKKYATNQATISGFQNLYCLAQCTPDLSPQDCRKCLGSVIGDLPWCCMGKQGGRVLYPSCNVRYELYPFFRVDNVSSPSPSSSILPPATTNSADSRGGSSGISGGTIVAIVVPIIVVVLLFIVAICFLSKRARKKHDSLQDGNTANDITSMESLQFDFGTIEAATNKFSADNKLGEGGFGEVFKGTLPSGQEIAVKRLSKSSGQGGAEFKNEVVVVAKLQHRNLARLLGFCLQGEEKILVYEYVANKSLDYTLFDPEKQGRLDWARRYRIIGGIARGMQYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIVGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLVMEIISGKKNSSFYDTDGADDLVSYTWKVWIEGAPLELVDPILREKITPNEVIRSIHIGLLCVQEDPSDRPTMASIVLMLDSNTVTLPTPKQPAFFINSIATDPNRPKELRFDSSTTKSITSSVNEMSISEMDPR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00058 587 ProSiteProfiles Protein kinase domain profile. 261 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00058 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 382 394 IPR008271 GO:0004672|GO:0006468
Trre9g00058 587 Pfam Protein tyrosine and serine/threonine kinase 263 530 IPR001245 GO:0004672|GO:0006468
Trre9g00058 587 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 222 336 - -
Trre9g00058 587 Gene3D Phosphorylase Kinase; domain 1 221 336 - -
Trre9g00058 587 FunFam cysteine-rich receptor-like protein kinase 10 337 539 - -
Trre9g00058 587 MobiDBLite consensus disorder prediction 169 190 - -
Trre9g00058 587 CDD STKc_IRAK 267 533 - -
Trre9g00058 587 SUPERFAMILY Protein kinase-like (PK-like) 246 562 IPR011009 -
Trre9g00058 587 FunFam Cysteine-rich receptor-like protein kinase 25 56 162 - -
Trre9g00058 587 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 587 - -
Trre9g00058 587 Gene3D - 57 162 IPR038408 -
Trre9g00058 587 Gene3D - 1 48 IPR038408 -
Trre9g00058 587 ProSiteProfiles Gnk2-homologous domain profile. 1 48 IPR002902 -
Trre9g00058 587 SMART serkin_6 261 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00058 587 MobiDBLite consensus disorder prediction 559 587 - -
Trre9g00058 587 MobiDBLite consensus disorder prediction 566 581 - -
Trre9g00058 587 Pfam Salt stress response/antifungal 65 160 IPR002902 -
Trre9g00058 587 Pfam Salt stress response/antifungal 1 45 IPR002902 -
Trre9g00058 587 ProSitePatterns Protein kinases ATP-binding region signature. 267 289 IPR017441 GO:0005524
Trre9g00058 587 ProSiteProfiles Gnk2-homologous domain profile. 54 162 IPR002902 -
Trre9g00058 587 Gene3D Transferase(Phosphotransferase) domain 1 337 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00058 Trre-Chr9 634065 637400 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00058 1 587 Receptor kinase-like Gene Family AT4G05200 56.303 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre9g00058 PK_Tyr_Ser-Thr 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00058 - - vun:114173511 907.516