Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00057 ATGGCTTGGCCAAAACCAGTAGTAGTATTTCTTTTACTTACTATGAGTTTCACAAAAGCAGAGGACAGTCCCGTCTTTCTCCACAAAAATTGTTCAACCAACAGTACAACCACCGCCAACAGCCCCTTCCAACTCAATCTAAAGACTCTCCTTTCTTCCCTCTCTTCTAACCCCACCGAATTCCACAACACCACCGTCACAGGAAATCCTCCCTCCAACACTGTCTACGGACTCTTCATGTGCAGAGGTGACGTGTCACTCCCTCTCTGCCGACAGTGCGTTCTAAACGCAACACAGACACTCTTTTCAGAATGTTCCCTTTCTAAACAGGCAGTTATATGGTACGACGAGTGCACCGTACGCTACTCAAACCGTTCTTTTTTCTCCACCTTTGATACTAGACCTCGTGTTGGTCTACTCAACACAGCAAACATAACCAACCAAAAAAGCTTCATGCGTTTATTGTTTCAAACAATGAACAAAACTGCTGATGATGCTTCTAATCATCCTATTGGTTCTAAGAAATATGCAACAAATCAAGCTACTATATCTGGATTTCAGAATTTGTATTGTTTGGCTCAGTGTACCCCTGATTTGTCTCCTCAAGATTGTAGAAAGTGTCTTGGTAGTGTCATTGGGGATCTTCCTTGGTGTTGTATGGGAAAACAAGGTGGAAGGGTTTTATATCCTAGCTGTAATGTTAGATATGAATTGTACCCTTTTTTTCGCGTAGACAATGTTTCGTCTCCGTCTCCTTCATCGTCAATTCTTCCTCCTGCAACTACTAATTCAGCTGATTCCCGAGGAGGAAGCAGTGGGATATCAGGTGGGACAATTGTTGCAATTGTAGTTCCAATCATAGTTGTTGTGCTTCTGTTTATTGTGGCCATTTGTTTCTTGAGTAAAAGGGCAAGGAAGAAGCATGATTCTCTACAAGATGGAAACACTGCAAATGATATCACCAGTATGGAGTCCTTACAATTTGATTTCGGCACCATTGAAGCAGCCACCAACAAATTCTCTGCAGATAATAAGTTAGGTGAAGGTGGATTTGGTGAAGTTTTTAAGGGAACTCTTCCAAGTGGACAAGAAATAGCTGTCAAAAGACTCTCCAAAAGTTCTGGACAAGGTGGAGCAGAATTTAAGAATGAAGTTGTTGTAGTTGCCAAGCTTCAGCACAGAAATTTGGCTAGGCTTCTTGGATTTTGTTTGCAAGGAGAGGAAAAGATACTTGTTTATGAATATGTAGCCAACAAAAGTTTGGACTATACTCTATTTGATCCCGAAAAGCAAGGGAGACTAGATTGGGCAAGGCGGTACAGGATTATTGGAGGCATTGCTCGAGGCATGCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACACCGTGATCTTAAAGCTAGCAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCGGATTTTGGCATGGCAAGAATAGTTGGAGTTGATCAAACTCAAGGAAACACTAGCAGAATTGTAGGAACTTACGGTTACATGGCTCCAGAGTATGCAATGCATGGAGAATTTTCAGTAAAGTCTGATGTATACAGTTTTGGAGTTCTCGTTATGGAGATTATAAGTGGCAAGAAAAATAGCTCTTTCTATGACACCGATGGTGCTGATGATCTAGTGAGCTATACATGGAAAGTTTGGATAGAAGGAGCACCATTAGAACTAGTGGACCCTATATTAAGAGAAAAAATTACTCCAAATGAAGTTATCAGAAGCATTCATATTGGTTTGCTTTGTGTTCAAGAAGATCCAAGTGACAGACCAACAATGGCATCAATAGTTCTTATGCTTGACAGTAACACAGTTACTCTTCCAACTCCGAAGCAGCCTGCATTTTTCATCAACAGTATTGCAACTGATCCAAACAGGCCAAAGGAGCTGCGATTTGATTCTTCTACAACAAAGTCAATAACAAGTTCTGTGAATGAGATGTCAATTAGTGAAATGGATCCGCGATAA 2001 0.4068 MAWPKPVVVFLLLTMSFTKAEDSPVFLHKNCSTNSTTTANSPFQLNLKTLLSSLSSNPTEFHNTTVTGNPPSNTVYGLFMCRGDVSLPLCRQCVLNATQTLFSECSLSKQAVIWYDECTVRYSNRSFFSTFDTRPRVGLLNTANITNQKSFMRLLFQTMNKTADDASNHPIGSKKYATNQATISGFQNLYCLAQCTPDLSPQDCRKCLGSVIGDLPWCCMGKQGGRVLYPSCNVRYELYPFFRVDNVSSPSPSSSILPPATTNSADSRGGSSGISGGTIVAIVVPIIVVVLLFIVAICFLSKRARKKHDSLQDGNTANDITSMESLQFDFGTIEAATNKFSADNKLGEGGFGEVFKGTLPSGQEIAVKRLSKSSGQGGAEFKNEVVVVAKLQHRNLARLLGFCLQGEEKILVYEYVANKSLDYTLFDPEKQGRLDWARRYRIIGGIARGMQYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIVGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLVMEIISGKKNSSFYDTDGADDLVSYTWKVWIEGAPLELVDPILREKITPNEVIRSIHIGLLCVQEDPSDRPTMASIVLMLDSNTVTLPTPKQPAFFINSIATDPNRPKELRFDSSTTKSITSSVNEMSISEMDPR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00057 666 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Trre9g00057 666 Pfam Protein tyrosine and serine/threonine kinase 342 609 IPR001245 GO:0004672|GO:0006468
Trre9g00057 666 SUPERFAMILY Protein kinase-like (PK-like) 325 640 IPR011009 -
Trre9g00057 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Trre9g00057 666 Pfam Salt stress response/antifungal 31 124 IPR002902 -
Trre9g00057 666 Pfam Salt stress response/antifungal 144 239 IPR002902 -
Trre9g00057 666 FunFam cysteine-rich receptor-like protein kinase 10 416 618 - -
Trre9g00057 666 SMART serkin_6 340 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00057 666 FunFam Cysteine-rich receptor-like protein kinase 25 135 241 - -
Trre9g00057 666 CDD STKc_IRAK 346 612 - -
Trre9g00057 666 Gene3D - 24 127 IPR038408 -
Trre9g00057 666 Gene3D - 136 241 IPR038408 -
Trre9g00057 666 Gene3D Phosphorylase Kinase; domain 1 300 415 - -
Trre9g00057 666 MobiDBLite consensus disorder prediction 645 660 - -
Trre9g00057 666 MobiDBLite consensus disorder prediction 638 666 - -
Trre9g00057 666 ProSiteProfiles Gnk2-homologous domain profile. 25 127 IPR002902 -
Trre9g00057 666 ProSiteProfiles Gnk2-homologous domain profile. 133 241 IPR002902 -
Trre9g00057 666 ProSiteProfiles Protein kinase domain profile. 340 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00057 666 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 301 415 - -
Trre9g00057 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 666 - -
Trre9g00057 666 MobiDBLite consensus disorder prediction 248 269 - -
Trre9g00057 666 Gene3D Transferase(Phosphotransferase) domain 1 416 620 - -
Trre9g00057 666 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 24 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00057 Trre-Chr9 634065 637637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00057 9 666 Receptor kinase-like Gene Family AT4G05200 53.881 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre9g00057 PK_Tyr_Ser-Thr 6.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00057 - - gmx:100305391 957.207