Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00055 ATGATTACTACAACAACCTCAAAACAAATCTTTACAATCTTGTTTGGTTTGCTGTGTCTAACCTTAGCAACAAAAGCATCTCCCACATACATCGGTTCTTACTGCAACAACAACACAACATACTTACCAAACAGCGCACTAGATACAAACCTCGATGTTCTCCTCAATTCTCTTACAACAAACGCTTCCCAACAACAAGACGGTTACTACATGACAATCATGGGTTTCTCAACAACTAGCGCCGTTAACGGAGACTTTCTCTGTCGTGGCGACATCAACACAACAACTTGTCAAAACTGTGTTACTGATGCAGCTAAACAGATCAAACGCCGTTGTAACAACCAAACGGAAGCGGTTATTTGGTACGAAGAGTGTTTGGTTCGTTACACAAACAGTTACTTTAGATTTTTCAGCATAGAACCAAGATTGAATCCTAGTGAGGGTAGAAATGTTTCTGGCGTTGACTTTAACCGCTTCAATAAATCTGTTATTGGGTTGTTGAATGATTTGGCGGTGAAGGCGGCGAATTCAGCGACGGCGAAGAAATTTGCTACAGGAGAAGTGGAAATTACGAGAAAGGGTATGACGGTTTATGGGTCGGGTCAGTGTATTACGGAATTAACGAGTGGTCAGTGTGAGACATGTTTGAGAAATGCGATTGGAACTCTTCCACAGTGTTGTAGTGGTCAACAGGGTGCTGGTGCTATGCTTGCGTCGTGTGTGGTTAGATATGAACTCTACCCTTTTTACGCCACCACATCTTCAGGAAAAAATGGAGTTGGAACAAAAACAATTCTCATAATTGTTTTTCTGGCCTTTCTTCCGTTATTACTTTTAATTTTAGGCATCTATTGCAAACGGAGAAGATCAAGGCAGAGACGTCATGCAATGCTAAGGGAAAATTTTGGAGATGAACTTAAAACACTAGAGTCATTACAATTCAAGTTTGCTACTATTGAAGCTGCCACAAACAAATTCTCACATGTGAACGAGATAGGCAAAGGAGGATTTGGTGTTGTCTACAAGGGTGCTCTTTCTGATGGTCGACAAATAGCAGTAAAAAAACTCTCGAGAGGTTCGGGACAAGGTTCAATAGAATTTCAAAATGAAATTTTACTTATAGCCAAGTTACAACATAGAAATTTGGTGACTTTATTAGGATTTTGCTTGGATGAGCGAGAGAAAATGCTCATATACGAATATGTGCCTAATAAGAGTCTTGATTATTTTCTATTCCATCCGCAAAAGCACAGGGTGTTACATTGGTTTGAGCGTTATAAAATTATTGGAGGAATTGCACGAGGAATTCTTTATTTACATGAATATTCAAGACTTAAAGTTATTCATCGAGATCTCAAACCTAGTAACATATTGTTAGATGACAATATGAATCCAAAAATATCAGATTTTGGTTTGGCTAGAATAGTTGCAATCGAACAAGAACAAGGAAGCACTAATAGAATCGTGGGAACATATGGTTATATGTCTCCAGAATATGCAATGCACGGACAATTTTCTGAGAAATCGGATGTGTTTAGCTTTGGAGTTATAACTCTTGAGATAGTTAGTGGAAAGAGAAATAATCGTCCCATTGAATCACACGATTTTGAGGACCTCGTAAGAACTGCTTGGAAACAATGGAGGAATCAAACGCCATTAGAAATGTTGGACCCCATTCTAAAAGAAGCATGTTCTCAAAGTGAAGTTATCAAGTGCATTCAGCTTGGTTTATTATGTATTCAAGAAAATCCAGATGATAGACCTACAATGGCACAAGTTGTTTCATATCTCAGTAGTCTTTTAGTTGAATTACCACTTCCTCAAGAGCCACCAGCATCTTCCATGGATAGAGGAATCAAGTTAAACATTACAACAAAAGAGTCTAGTTCGGCTCAATTTATTAGTCACTCTAACTCTACATCATCCTCAATCAATGACATGACTAAGAGCCAATTTTTTCCTCGATAG 1968 0.3847 MITTTTSKQIFTILFGLLCLTLATKASPTYIGSYCNNNTTYLPNSALDTNLDVLLNSLTTNASQQQDGYYMTIMGFSTTSAVNGDFLCRGDINTTTCQNCVTDAAKQIKRRCNNQTEAVIWYEECLVRYTNSYFRFFSIEPRLNPSEGRNVSGVDFNRFNKSVIGLLNDLAVKAANSATAKKFATGEVEITRKGMTVYGSGQCITELTSGQCETCLRNAIGTLPQCCSGQQGAGAMLASCVVRYELYPFYATTSSGKNGVGTKTILIIVFLAFLPLLLLILGIYCKRRRSRQRRHAMLRENFGDELKTLESLQFKFATIEAATNKFSHVNEIGKGGFGVVYKGALSDGRQIAVKKLSRGSGQGSIEFQNEILLIAKLQHRNLVTLLGFCLDEREKMLIYEYVPNKSLDYFLFHPQKHRVLHWFERYKIIGGIARGILYLHEYSRLKVIHRDLKPSNILLDDNMNPKISDFGLARIVAIEQEQGSTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVITLEIVSGKRNNRPIESHDFEDLVRTAWKQWRNQTPLEMLDPILKEACSQSEVIKCIQLGLLCIQENPDDRPTMAQVVSYLSSLLVELPLPQEPPASSMDRGIKLNITTKESSSAQFISHSNSTSSSINDMTKSQFFPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00055 655 CDD STKc_IRAK 332 600 - -
Trre9g00055 655 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 134 - -
Trre9g00055 655 Gene3D - 27 134 IPR038408 -
Trre9g00055 655 Gene3D - 147 249 IPR038408 -
Trre9g00055 655 SMART serkin_6 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00055 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Trre9g00055 655 Pfam Salt stress response/antifungal 35 131 IPR002902 -
Trre9g00055 655 Pfam Salt stress response/antifungal 157 247 IPR002902 -
Trre9g00055 655 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Trre9g00055 655 Gene3D Phosphorylase Kinase; domain 1 286 401 - -
Trre9g00055 655 FunFam Cysteine-rich receptor-like protein kinase 10 143 249 - -
Trre9g00055 655 Gene3D Transferase(Phosphotransferase) domain 1 402 605 - -
Trre9g00055 655 FunFam cysteine-rich receptor-like protein kinase 10 402 604 - -
Trre9g00055 655 ProSitePatterns Protein kinases ATP-binding region signature. 332 355 IPR017441 GO:0005524
Trre9g00055 655 ProSiteProfiles Protein kinase domain profile. 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00055 655 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 286 401 - -
Trre9g00055 655 ProSiteProfiles Gnk2-homologous domain profile. 139 249 IPR002902 -
Trre9g00055 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 650 - -
Trre9g00055 655 MobiDBLite consensus disorder prediction 632 655 - -
Trre9g00055 655 Pfam Protein kinase domain 327 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00055 655 SUPERFAMILY Protein kinase-like (PK-like) 312 625 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00055 Trre-Chr9 605313 608944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00055 6 655 Receptor kinase-like Gene Family AT4G05200 43.658 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre9g00055 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00055 - - cam:101500396 1011.52