Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00053 ATGGCTTCTGCAAAACATAAACTTCTTTGCATATGTCTGTGTCTGATTCTGAACTTGTTCATAACAACAACAAAAGCAACACCAACTTACACAACAACTCATTGCACAAACACAACCACTTATGCACCCAACACCACTTTCCATACCAATCTCAACATCCTCTTCTATTATTTCTCCAACAATATCTCCCAATCCAACGGTTACTTTTTCGCCATGACCGGTTTCAACACCGACGATGCAGTCGGTGGACTCTACCTCTGCCGCGGCGACGTCACCACCACAGTCTGTGATCAGTGTCTCACCGCTGCAGTCAAAGAGATAAGAATTCGGTGTCCGAATCAAAGAGAGGCTCTGATTTGGTACGACGAGTGCTTCCTCCGTTTCACAAACAGTTACTTCGCCGTCGATAAGATCGTTCCTAGAGCGAACTTCGACGACGGAAATATTTCCTCCGGCGTTGACTTTAAAAGATTCAACCAATCTCTGCATGGATTGCTGAATGATTTGGTAACGGAAGCCGCGGCGAGTTTACAGTCAAAGAAGTTCGCCGCCGGCGAAACTGCGGTGACGGAGTCGATGAAGTTGTATGGATTGGTGCAGTGCACCAATGACTTAACGAATAGTGGGTGTGGGACGTGTTTGAGAAATGCAATTGGAACTTTTCCTAATGGAAAACAGGGAGCAAGAGTTTTGCTTCCGTCTTGTAATGTTAGATACCAACTTTACCCTTTTTTCACTTTATCTTCAACATCATCTTCAGGGGGTAGCAAACTTGGACCTGGTACAATTGCGGTCGTGATTGTTGTACCCATTGTTTTCCTAATTATCTTATTCTTTGGTTGCTACTATTTCAAGAGAAGGTCCAAGATGAAGAAGAGACTACTGCCTAGTTTGATGGAAAATTTTGGGGATGAAATTCCAAGTTTGGAGTCATTGCAATTCAACTTGGCTACTCTAGAAGCAGCCACTAACCAGTTCTCATTGCAGAATAAGATTGGAAACGGAGGATTTGGGGAAGTTTACAAGGGGGTTTTGCTAGATGGGAGACAAATAGCCGTAAAAAAACTTTCAAAAAGCTCAGGACAAGGCACGATAGAATTTAAAAATGAGATTGTGCTAATAGCCAAACTCCAGCATAGAAATTTGGTAACCTTATATGGATTTTGCTCGGAAGAACAAGAAAAAATGCTTGTTTATGAATATGTACCAAATAAAAGTCTTGATTATTTCTTATTCCATCCAAATAAAGGAAGAGTTTTGAGTTGGGATGAAAGATATAAAATTATAGGTGGAATTGCACGAGGAATTCATTACCTACATGATCAATCAAGACTTAAAGTTATACACCGTGATCTCAAACCTAGCAATATATTGTTAGATGAGGTGATGAATCCAAAAATATCGGACTTTGGCATGGCAAAAATTATTGATATAGATCAACATCAAGGAAATACTAAGAGAATTGCTGGAACTTATGGTTATATGTCTTTTGAATACGCAATGCATGGACATTATTCAGAAAAATCAGATGTATTTAGTTTTGGAGTCATAATTTTAGAGATAATTAGTGCAAAACGGAATGCACTTAGTCTTGGTTCGCCAGTTTTCGATGATCTCTTGAGTTATGCTTGGAAAAATTGGAGGGATGAAAAACCGCTAGAAGTATTGGACTCTGATATAGAAAAATCATTTTCTTACAGTGAAGTCATTAAATGCATTCAAATTGGTTTATTATGTGTGCAACAAAACCCAGATGATAGACCAACAATGGAAAACGTTGTTACATATTTAAGTAGTGTTTCAGTGGAATTACCAATACCTCAAGAGCCTGCAGGTTTCATGGGTAATGGAACAAATCCAAGCATAATACCAAGGGATAATTCGGTTCAACATAACAATAGTAATACTACGGGATCCTCAATCAATGATATGACCATGAGTCATTATTTATCCCGATAG 1959 0.391 MASAKHKLLCICLCLILNLFITTTKATPTYTTTHCTNTTTYAPNTTFHTNLNILFYYFSNNISQSNGYFFAMTGFNTDDAVGGLYLCRGDVTTTVCDQCLTAAVKEIRIRCPNQREALIWYDECFLRFTNSYFAVDKIVPRANFDDGNISSGVDFKRFNQSLHGLLNDLVTEAAASLQSKKFAAGETAVTESMKLYGLVQCTNDLTNSGCGTCLRNAIGTFPNGKQGARVLLPSCNVRYQLYPFFTLSSTSSSGGSKLGPGTIAVVIVVPIVFLIILFFGCYYFKRRSKMKKRLLPSLMENFGDEIPSLESLQFNLATLEAATNQFSLQNKIGNGGFGEVYKGVLLDGRQIAVKKLSKSSGQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEQEKMLVYEYVPNKSLDYFLFHPNKGRVLSWDERYKIIGGIARGIHYLHDQSRLKVIHRDLKPSNILLDEVMNPKISDFGMAKIIDIDQHQGNTKRIAGTYGYMSFEYAMHGHYSEKSDVFSFGVIILEIISAKRNALSLGSPVFDDLLSYAWKNWRDEKPLEVLDSDIEKSFSYSEVIKCIQIGLLCVQQNPDDRPTMENVVTYLSSVSVELPIPQEPAGFMGNGTNPSIIPRDNSVQHNNSNTTGSSINDMTMSHYLSR 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00053 652 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00053 652 ProSiteProfiles Gnk2-homologous domain profile. 140 244 IPR002902 -
Trre9g00053 652 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 648 - -
Trre9g00053 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Trre9g00053 652 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Trre9g00053 652 CDD STKc_IRAK 332 597 - -
Trre9g00053 652 Gene3D Transferase(Phosphotransferase) domain 1 402 605 - -
Trre9g00053 652 SMART serkin_6 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00053 652 FunFam cysteine-rich receptor-like protein kinase 10 402 604 - -
Trre9g00053 652 Pfam Salt stress response/antifungal 156 241 IPR002902 -
Trre9g00053 652 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Trre9g00053 652 SUPERFAMILY Protein kinase-like (PK-like) 312 612 IPR011009 -
Trre9g00053 652 FunFam Cysteine-rich receptor-like protein kinase 10 142 244 - -
Trre9g00053 652 ProSitePatterns Protein kinases ATP-binding region signature. 332 355 IPR017441 GO:0005524
Trre9g00053 652 Gene3D - 141 244 IPR038408 -
Trre9g00053 652 Gene3D - 28 133 IPR038408 -
Trre9g00053 652 FunFam Cysteine-rich receptor-like protein kinase 10 286 401 - -
Trre9g00053 652 Pfam Protein kinase domain 327 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00053 652 Gene3D Phosphorylase Kinase; domain 1 290 401 - -
Trre9g00053 652 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00053 Trre-Chr9 596346 600863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00053 15 647 Receptor kinase-like Gene Family AT4G05200 44.495 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre9g00053 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00053 - - mtr:11442717 1006.9