Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00052 ATGGCTTCTGCAAAACATAAACTTCTTTGCATATGTCTGTGTCTGATTCTGAACTTGTTCATAACAACAACAAAAGCAACACCAACTTACACAACAACTCATTGCACAAACACAACCACTTATGCACCCAACACCACTTTCCATACCAATCTCAACATCCTCTTCTATTATTTCTCCAACAATATCTCCCAATCCAACGGTTACTTTTTCGCCATGACCGGTTTCAACACCGACGATGCAGTCGGTGGACTCTACCTCTGCCGCGGCGACGTCACCACCACAGTCTGTGATCAGTGTCTCACCGCTGCAGTCAAAGAGATAAGAATTCGGTGTCCGAATCAAAGAGAGGCTCTGATTTGGTACGACGAGTGCTTCCTCCGTTTCACAAACAGTTACTTCGCCGTCGATAAGATCGTTCCTAGAGCGAACTTCGACGACGGAAATATTTCCTCCGGCGTTGACTTTAAAAGATTCAACCAATCTCTGCATGGATTGCTGAATGATTTGGTAACGGAAGCCGCGGCGAGTTTACAGTCAAAGAAGTTCGCCGCCGGCGAAACTGCGGTGACGGAGTCGATGAAGTTGTATGGATTGGTGCAGTGCACCAATGACTTAACGAATAGTGGGTGTGGGACGTGTTTGAGAAATGCAATTGGAACTTTTCCTAATGGAAAACAGGGAGCAAGAGTTTTGCTTCCGTCTTGTAATGTTAGATACCAACTTTACCCTTTTTTCACTTTATCTTCAACATCATCTTCAGGGGGTAGCAAACTTGGACCTGGTACAATTGCGGTCGTGATTGTTGTACCCATTGTTTTCCTAATTATCTTATTCTTTGTTGGGGATGAAATTCCAAGTTTGGAGTCATTGCAATTCAACTTGGCTACTCTAGAAGCAGCCACTAACCAGTTCTCATTGCAGAATAAGATTGGAAACGGAGGATTTGGGGAAGTTTACAAGGGGGTTTTGCTAGATGGGAGACAAATAGCCGTAAAAAAACTTTCAAAAAGCTCAGGACAAGGCACGATAGAATTTAAAAATGAGATTGTGCTAATAGCCAAACTCCAGCATAGAAATTTGGTAACCTTATATGGATTTTGCTCGGAAGAACAAGAAAAAATGCTTGTTTATGAATATGTACCAAATAAAAGTCTTGATTATTTCTTATTCCATCCAAATAAAGGAAGAGTTTTGAGTTGGGATGAAAGATATAAAATTATAGGTGGAATTGCACGAGGAATTCATTACCTACATGATCAATCAAGACTTAAAGTTATACACCGTGATCTCAAACCTAGCAATATATTGTTAGATGAGGTGATGAATCCAAAAATATCGGACTTTGGCATGGCAAAAATTATTGATATAGATCAACATCAAGGAAATACTAAGAGAATTGCTGGAACTTATGGTTATATGTCTTTTGAATACGCAATGCATGGACATTATTCAGAAAAATCAGATGTATTTAGTTTTGGAGTCATAATTTTAGAGATAATTAGTGCAAAACGGAATGCACTTAGTCTTGGTTCGCCAGTTTTCGATGATCTCTTGAGTTATGCTTGGAAAAATTGGAGGGATGAAAAACCGCTAGAAGTATTGGACTCTGATATAGAAAAATCATTTTCTTACAGTGAAGTCATTAAATGCATTCAAATTGGTTTATTATGTGTGCAACAAAACCCAGATGATAGACCAACAATGGAAAACGTTGTTACATATTTAAGTAGTGTTTCAGTGGAATTACCAATACCTCAAGAGCCTGCAGGTTTCATGGGTAATGGAACAAATCCAAGCATAATACCAAGGGATAATTCGGTTCAACATAACAATAGTAATACTACGGGATCCTCAATCAATGATATGACCATGAGTCATTATTTATCCCGATAG 1893 0.3914 MASAKHKLLCICLCLILNLFITTTKATPTYTTTHCTNTTTYAPNTTFHTNLNILFYYFSNNISQSNGYFFAMTGFNTDDAVGGLYLCRGDVTTTVCDQCLTAAVKEIRIRCPNQREALIWYDECFLRFTNSYFAVDKIVPRANFDDGNISSGVDFKRFNQSLHGLLNDLVTEAAASLQSKKFAAGETAVTESMKLYGLVQCTNDLTNSGCGTCLRNAIGTFPNGKQGARVLLPSCNVRYQLYPFFTLSSTSSSGGSKLGPGTIAVVIVVPIVFLIILFFVGDEIPSLESLQFNLATLEAATNQFSLQNKIGNGGFGEVYKGVLLDGRQIAVKKLSKSSGQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEQEKMLVYEYVPNKSLDYFLFHPNKGRVLSWDERYKIIGGIARGIHYLHDQSRLKVIHRDLKPSNILLDEVMNPKISDFGMAKIIDIDQHQGNTKRIAGTYGYMSFEYAMHGHYSEKSDVFSFGVIILEIISAKRNALSLGSPVFDDLLSYAWKNWRDEKPLEVLDSDIEKSFSYSEVIKCIQIGLLCVQQNPDDRPTMENVVTYLSSVSVELPIPQEPAGFMGNGTNPSIIPRDNSVQHNNSNTTGSSINDMTMSHYLSR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00052 630 Gene3D Phosphorylase Kinase; domain 1 282 379 - -
Trre9g00052 630 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 133 - -
Trre9g00052 630 ProSiteProfiles Gnk2-homologous domain profile. 140 244 IPR002902 -
Trre9g00052 630 Pfam Protein kinase domain 305 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00052 630 SMART serkin_6 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00052 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Trre9g00052 630 SUPERFAMILY Protein kinase-like (PK-like) 290 590 IPR011009 -
Trre9g00052 630 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Trre9g00052 630 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 626 - -
Trre9g00052 630 FunFam cysteine-rich receptor-like protein kinase 10 380 582 - -
Trre9g00052 630 FunFam Cysteine-rich receptor-like protein kinase 10 279 379 - -
Trre9g00052 630 ProSitePatterns Protein kinases ATP-binding region signature. 310 333 IPR017441 GO:0005524
Trre9g00052 630 ProSiteProfiles Protein kinase domain profile. 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00052 630 CDD STKc_IRAK 310 575 - -
Trre9g00052 630 Gene3D - 28 133 IPR038408 -
Trre9g00052 630 Gene3D - 141 244 IPR038408 -
Trre9g00052 630 FunFam Cysteine-rich receptor-like protein kinase 10 142 244 - -
Trre9g00052 630 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Trre9g00052 630 Pfam Salt stress response/antifungal 156 241 IPR002902 -
Trre9g00052 630 Gene3D Transferase(Phosphotransferase) domain 1 380 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00052 Trre-Chr9 596346 600863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00052 15 625 Receptor kinase-like Gene Family AT4G05200 43.788 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre9g00052 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00052 - - mtr:11442717 951.429