Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00050 ATGAAGTTGTATGGATTAATGCAGTGTCTAGATAACTTACATAAAAGTGAGTGTGAGAAGTGTTTGCGAGATGCGATCAGAACTCTTCCGAATAGAAAACAAGGCGCAAGAGCTGGTGAAGGGGATAAGAAACTTGGACGATCGGGCACAATTGCAGCTGCGGTTGTCTTGCCCATTGTTTTCCTAATTATCTTATTTTTGTGTTGCTACGATTTCAAGAGACGGTCCAAGAAGAAGAGAGTAATGGCTAGTCTGACGGAAAATTTTGAGGATGAAATTCCAACATTGGAGTCTTTGCGATTCAATTTGGCTACTCTAGAAGCAGCCACTAACCAGTTCTCATTGCAGAATAAGATTGGAAGCGGGGGATTTGGAGAAGTTTACAAGGGGGTTTTGCTAGATGGGCGACAAATAGCCGTAAAAAAACTTTCAAAATATTCAGAACAAGGCACGATAGAATTTAAAAATGAGATCGTGTTAATAGCAAAACTGCAACATAGAAATTTGGTAACTTTGTATGGATTTTGCTCTGAAGAACAAGAGAAAATGCTTGTTTATGAATATGTAGCTAATAAAAGTCTAAATTCCTTCTTATTTGATCCTAATAAAAGAAGAGTTTTGAGTTGGCATGAAAGATATAGAATCATAGGCGGAATCGCGCGAGGAATTCATTACTTACATGATCAATCAAGACTAAAAGTCATACACCGTGATCTCAAACCTAGCAATATATTGTTGGATGAGATGATGAATCCAAAAATATCTGACTTTGGTATGGCAAAAATGATCGATATTAATCAACATCAAGGAAATACAAAGAGAATTGTCGGAACTCGTGGTTATATGTCTTCTGAATATGCAATGCATGGACACTATTCGGAAAAATCAGATGTATTTAGCTTCGGGGTCATAATTTTAGAGATAATTAGTTCAAAGCGGAATGCACGTAGCCTTGGTTCACCAGATTTTAATGATCTCTTAAGTTATGCTTGGAAAAACTGGAAGGATGAAAAACAACTAGAACTATTGGACTCTGATATTGAAAAGTCATTTTGTCATAGTGAAGTGACTAAATGCATTCAAATTGGTTTGTTATGTGTGCAACAAAATCCATTTGATAGACCAACAATGGAAAGAATTGTCTCGTATCTGAGTAGTGTATCGGCGGAGTTACCATTGCCTCAAGAGCCTGCAGGATTCATGGCTAATGGAACGAATCCAAGCATGATAGCAAGGATTAATTCCTCAGTCAATCATATGACAATGAGTCTTACTTTGCCCCGATAG 1287 0.373 MKLYGLMQCLDNLHKSECEKCLRDAIRTLPNRKQGARAGEGDKKLGRSGTIAAAVVLPIVFLIILFLCCYDFKRRSKKKRVMASLTENFEDEIPTLESLRFNLATLEAATNQFSLQNKIGSGGFGEVYKGVLLDGRQIAVKKLSKYSEQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEQEKMLVYEYVANKSLNSFLFDPNKRRVLSWHERYRIIGGIARGIHYLHDQSRLKVIHRDLKPSNILLDEMMNPKISDFGMAKMIDINQHQGNTKRIVGTRGYMSSEYAMHGHYSEKSDVFSFGVIILEIISSKRNARSLGSPDFNDLLSYAWKNWKDEKQLELLDSDIEKSFCHSEVTKCIQIGLLCVQQNPFDRPTMERIVSYLSSVSAELPLPQEPAGFMANGTNPSMIARINSSVNHMTMSLTLPR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00050 428 FunFam cysteine-rich receptor-like protein kinase 10 189 391 - -
Trre9g00050 428 SMART serkin_6 113 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00050 428 Gene3D Transferase(Phosphotransferase) domain 1 189 393 - -
Trre9g00050 428 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 406 - -
Trre9g00050 428 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Trre9g00050 428 Gene3D Phosphorylase Kinase; domain 1 72 188 - -
Trre9g00050 428 Gene3D - 1 42 IPR038408 -
Trre9g00050 428 Pfam Protein kinase domain 114 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00050 428 CDD STKc_IRAK 119 384 - -
Trre9g00050 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Trre9g00050 428 ProSiteProfiles Protein kinase domain profile. 113 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00050 428 FunFam Cysteine-rich receptor-like protein kinase 10 73 188 - -
Trre9g00050 428 SUPERFAMILY Protein kinase-like (PK-like) 98 402 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00050 Trre-Chr9 564194 577332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00050 3 427 Receptor kinase-like Gene Family AT4G05200 44.894 2.37e-131 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre9g00050 Pkinase 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00050 - - mtr:11442717 636.336