Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00029 ATGGATTCTACTGACCTTATTTCTCAAGAATGGAGTTCTCTTAGCGGACTCTACACTGCCGAGGAAGCCGACTTTATGAACCACTTTCTTGGTAACTCCTCACTCCCACAAGACCTTTATCAAAACTCCAATTTTGGAACTGAATCTGCATTTTGGCCTTCCCGTGATTCCCCAATTGTTACTGTCACAAAAAACAACAACTCTAACTTTGCTGCGCAAGTTCGTAGCTCAACAATTTCTGATAGCAGTAATATCTTCTCCGCAACAAGTTGTGTCGCCAACAATCCAGTAACCAACTTTGGCTATATTTCTATGGGTCTTTCCATAGGCGATTCCAAATTCGCTCCATTTACAACACAACCTGATGAACAAGTTCTAGCTGAGAATAATTTGCAGGCCCCAAAGGAACATGAAATACTAGTTTCCGAACCAGAAGAGGATACAACCACAAGCGTGGAAAAATCAGGAAAAAGATCAAGAAGCTCCATTGAGGTCCCAAAGAACAAGAGGAATGTCAAATGCAGGAAGAATATGAGATGTGCTTCTAGAAGCACTGAGGATCAGACCATAAGCAGTTGTTGTTCAGAGGATGAATCCAATTCTTCTCATGAGCTGCGTGGAGGGTCATCTTCAAGTTTGAGCCAGAACGATTCTACAGCTCTGAAGTTAAGTGGCAAATCAAGATCTAGCAGAGGTCCTGCTACTGACCCACAGAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAGTCCTACAAAACCTTGTCCCAAATGGAACTAAGGTGGATATCAGCACCATGCTTGACGAAGCTGTCCAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTAAGCTCTGATGATTTGTGGATGTACTCTCCCATTGCTTACAATGGAATGAACATTGGACTGGAACTTGGTATTACCCCAACAAAGGATATGCATAGCATCGCAATAAAAGAACATGCAGCAGTTTAA 993 0.4169 MDSTDLISQEWSSLSGLYTAEEADFMNHFLGNSSLPQDLYQNSNFGTESAFWPSRDSPIVTVTKNNNSNFAAQVRSSTISDSSNIFSATSCVANNPVTNFGYISMGLSIGDSKFAPFTTQPDEQVLAENNLQAPKEHEILVSEPEEDTTTSVEKSGKRSRSSIEVPKNKRNVKCRKNMRCASRSTEDQTISSCCSEDESNSSHELRGGSSSSLSQNDSTALKLSGKSRSSRGPATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLDEAVQYVKFLQLQIKLLSSDDLWMYSPIAYNGMNIGLELGITPTKDMHSIAIKEHAAV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00029 330 FunFam Basic helix-loop-helix transcription factor 234 291 - -
Trre9g00029 330 MobiDBLite consensus disorder prediction 138 170 - -
Trre9g00029 330 MobiDBLite consensus disorder prediction 135 170 - -
Trre9g00029 330 Pfam Helix-loop-helix DNA-binding domain 243 283 IPR011598 GO:0046983
Trre9g00029 330 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 78 306 - -
Trre9g00029 330 Gene3D - 234 290 IPR036638 GO:0046983
Trre9g00029 330 SMART finulus 239 288 IPR011598 GO:0046983
Trre9g00029 330 MobiDBLite consensus disorder prediction 186 240 - -
Trre9g00029 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 282 IPR011598 GO:0046983
Trre9g00029 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 298 IPR036638 GO:0046983
Trre9g00029 330 MobiDBLite consensus disorder prediction 186 236 - -
Trre9g00029 330 CDD bHLH_AtIND_like 234 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00029 Trre-Chr9 397000 398642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00029 10 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 40.922 5.77e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g00029 HLH 7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00029 - - mtr:11440124 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00029 9 397000 398642 Trre9g00029 9 397000 398642 ECH
Trre9g00029 9 397000 398642 Trre1g05771 1 62581808 62583326 PCT