Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00020 ATGCGAATGGGTGCCGCTCATCAAGAAAACTACTACAAGCGGCGTGCTGCGTCTTCGTACCCTCTGGACTCACCGGTCATATTAAAGAAGAGGGCAGTTGATATTAAGGAGTGCAATCAAGCAGCCTCTTCTTGTTCCATCTACAGACATCTTCATGCCTTGGAGATGGATGTGAATAAGAGACCATTGAGCAATTACGCCGAGACAGTTCAAAAAGAGGTGACAAACCAGATGCGTGAGATTCTTGTCGATTGGTTAGTAGAGGTTACAGAGGAATTCAAGCTTGTTTCTGATACCCTATACCTCGCTGTTTCTTGCGTTGATCGCTTCCTCTCTATTCGTCCTCTCAACATGAAACACCTTCAGCTTCTCGGCGTTTCATCCATCCTCATTGCCTCGAAACAAGGAGATATAAGCCCTCCACACGCACAACAATTGTGCTTTATGACAGATAATACTTACACCGTCTCAGAGGTTATACAGATGGAGAAGGACATATATGCATCTTTGAACTCTGACTTGGGCTATCCAACCTCTAAAACTTTTCTCAGAATTTTTATGGGAGCTGATCAGACAGATTTTCAGCATTCTAGCCAGCAATTGGAATTCTTGGCTTGTTATCTTTTGGAGCTCTGCCTATTATGCTCTAAGTGCGTCAAGTTCTTACCCTCCATAGCGGCCGCATCTGCTTTATTTCTATCGAGGTTTATAATTCAACCAAACCACCACCCTTGGAATCCAATGTTACAATGTCAAACAGGATATAAGCCACCTGAGCTGCAAGAATGTGTCTTTGCCATACATGATATGCACTCCACTATCACAGTCTGCCCTTTACAAGCAGTGCGGGAAAAGTACTTGCAACCCAAGTTTACATGTGTGGCATCTTTGACTGCTGGGGAAATTCCTGCAAGTTATTTTGAGCCCATTGATGAATAA 939 0.4366 MRMGAAHQENYYKRRAASSYPLDSPVILKKRAVDIKECNQAASSCSIYRHLHALEMDVNKRPLSNYAETVQKEVTNQMREILVDWLVEVTEEFKLVSDTLYLAVSCVDRFLSIRPLNMKHLQLLGVSSILIASKQGDISPPHAQQLCFMTDNTYTVSEVIQMEKDIYASLNSDLGYPTSKTFLRIFMGADQTDFQHSSQQLEFLACYLLELCLLCSKCVKFLPSIAAASALFLSRFIIQPNHHPWNPMLQCQTGYKPPELQECVFAIHDMHSTITVCPLQAVREKYLQPKFTCVASLTAGEIPASYFEPIDE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00020 312 Gene3D - 62 175 - -
Trre9g00020 312 SMART Cyclin_C_2 177 305 IPR004367 -
Trre9g00020 312 SUPERFAMILY Cyclin-like 176 298 IPR036915 -
Trre9g00020 312 FunFam Cyclin A1 165 296 - -
Trre9g00020 312 PIRSF Cyclin_A_B_D_E 9 306 IPR046965 GO:0016538|GO:0044772
Trre9g00020 312 Gene3D - 47 296 - -
Trre9g00020 312 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Trre9g00020 312 Pfam Cyclin, N-terminal domain 47 174 IPR006671 -
Trre9g00020 312 PANTHER CYCLINS 40 288 IPR039361 -
Trre9g00020 312 Pfam Cyclin, C-terminal domain 177 298 IPR004367 -
Trre9g00020 312 SUPERFAMILY Cyclin-like 51 174 IPR036915 -
Trre9g00020 312 SMART cyclin_7 181 269 IPR013763 -
Trre9g00020 312 SMART cyclin_7 84 168 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00020 Trre-Chr9 336936 338656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00020 23 310 Core Cell Cycle Gene Families AT1G47230 50.345 3.66e-96 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00020 K06627 - tcc:18608037 294.278