Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00010 ATGGAAAAAGAGGAAGTGGTGTTGTCCTCGTGCTCTTCTGATTCCAGCGATGATGACGATGATTATGAAGTTGAAGAACGGAAATCTCAGAATGTGGAAGCCCTGATAAGTGGTAACCTGATCTTGAAGAGACAATCGTTGCTGCCGCGAGTATTGTCGACTAATGGAGCGGCTTCTGTTTGCAGAAAACCTTTCAAACCTCCATCGGAAGATGCTTCTTATAATAATCAACAAGACCTTGCTCGTAGGCTCTCTGCTCGCAAAAGGTTTGTTCCATGGGGATCTACTACTCCTATTCCTATTCTTATTCCGACAACAACAACATCATCCACCGCCGCCATACCTTTGGAGGATAAGGATGAGGTTCCTCTGCCCCCTGGTATTGATCCTCTAATACTCTGGCACCCTCCTCCGGATGAGGAACCTTCTAATTCTAATAATTTCACTACAATATCAGTTGATCCCTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAATTTATGTTTGACTGTGTTGCCGGACTATGCGACACACCCGACGTCTATGGATGCATTTTGGCAGATGATATGGGTTTGGGTAAGACATTGCAGTCCATCACATTGCTGTATACTCTTATCTGTCAAGGCTTCGATGGGAAGCCTATGGTTCGAAAGGCCATCATTGTCACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCAACAAGTGGCTTGGACAAAGAGTTCGCCTTGTTGCTCTTTGTGAAACCACAAGACAAGATGTTATCTCCGGGATTAACAGTTTTACAAGTCCCCAAAGCAAATTACAGGTGCTCATTGTTTCATACAAGACATTCCGAATGCATTCATCAAAGTTTAGCTGTAGTGACTCATGTGATCTCCTCATATGTGATGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACAAGGCATTGGCTGCTCTCCCGTGCAAACGTAGAGTTTTGTTGTCAGGAACTCCTTTGCAGAATGACTTAGAAGAATTTTTCGCAATAGTTAACTTTACTAATCCTGGAATATTGGGTGGCATTGCACATTTTCGACGTTACTTTGAGGCACCAATAATTTGCGGAAGAGAACCCGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCTGAACGCACTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGACGGACTAATGCTTTGTTATCAAATCACTTACCACCAAAGATAATCGAAGTTGTTTGCTGCAAGTTGACTCCGCTACAATCAGATCTATATAAACATTTTATACAGTCCAAAAATGTTAAACGGGCGATTACTGAAGAACGGAAGCAATCGAAGATTTTGGCCTACATAACAGCTCTAAAAAAGTTATGCAATCATCCAAAGCTCATCTATGATACAATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGCATCCGATTCTTCCCTCCAAATATGTTATCCGGAAGGTCTGGATCATGGACAGGAGGGCATGGAGGCTGGGTTGAGCTTTCCGGGAAAATGCAAGTCTTGGCAAGATTACTTGCTCAATTACGTCAAAGAACAAATGACCGCATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACAAAGGTACCCTCACTTGAGGCTTGATGGAGCTACATCAATCAGTAAACGGCAAAAGTTGGTCAACTGCTTGAACGACCTGTCTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAACCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGCCAGAAGAAAAGAGTTTATATTTATAGATTTCTCAGTGCAGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGAGGGAGCAATGCGATAGCGCCGTGGCACAGGGTAACTTTCTTTCAACAGAGGATCTTCGCAATTTGTTTACTTTTGATGAGAATGTAAAGTCAGAGATTCATGAAAAGATGCGATGCAATCGGTGCCAACCATATGATGGGCCTCAAGACACTGATGTCTTATCGACAATGATTAATAGTGAATGCGATGATGAGGACACCTCTGATATAGGTGGATTTGCTGAAATTGCAGGCTGCTTAGGGAATTTGAAAAGATCAGAAAAGCAGGTAGGGAATCCATTGGAAGAAGATTTAAGTTGTTGGGGCCATCATTTTTCCCCAACCTCTGTACCAGATGCTATCCTTCAGGCTGCAGCTGGTGATGAGGTGACTTTTGTCTTTACAAACCAAGTTGACGGAAAGCTGGTACCGGTTGACTCCATAATCAGTCCCAAGCTACAGAAAAAGGAATTACACCAGTCAAGGAGGAACGTCGAGCGCAAATCCACCCCCTTTGCTTTACATAATAAGCTAGTACCACTACGTTCTGCATCTAGTATTGCCACCGTGTCATGGTCATCTCCAATTGCTTGGACGAAGGAAGCAACAAATTGTGTAAGAATTACCAAAAATATCTCCACAAGTGTAGCATTAAACACCAAACACTCTCTTGTAAACGAAGTGTCAAGACAGAAAAGATCATGCCCTGTTGATACCAATAGTGGGAACTCTCTTGTAAATGAAGTATCACAGAAAAAACCATGTCATGTTGCTAACAATGACGATGACTTTGAGTAA 2772 0.4278 MEKEEVVLSSCSSDSSDDDDDYEVEERKSQNVEALISGNLILKRQSLLPRVLSTNGAASVCRKPFKPPSEDASYNNQQDLARRLSARKRFVPWGSTTPIPILIPTTTTSSTAAIPLEDKDEVPLPPGIDPLILWHPPPDEEPSNSNNFTTISVDPLLVRFLRPHQREGVQFMFDCVAGLCDTPDVYGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEINKWLGQRVRLVALCETTRQDVISGINSFTSPQSKLQVLIVSYKTFRMHSSKFSCSDSCDLLICDEAHRLKNDQTITNKALAALPCKRRVLLSGTPLQNDLEEFFAIVNFTNPGILGGIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYKHFIQSKNVKRAITEERKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPNMLSGRSGSWTGGHGGWVELSGKMQVLARLLAQLRQRTNDRIVLVSNYTQTLDLFAQLCREQRYPHLRLDGATSISKRQKLVNCLNDLSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQREQCDSAVAQGNFLSTEDLRNLFTFDENVKSEIHEKMRCNRCQPYDGPQDTDVLSTMINSECDDEDTSDIGGFAEIAGCLGNLKRSEKQVGNPLEEDLSCWGHHFSPTSVPDAILQAAAGDEVTFVFTNQVDGKLVPVDSIISPKLQKKELHQSRRNVERKSTPFALHNKLVPLRSASSIATVSWSSPIAWTKEATNCVRITKNISTSVALNTKHSLVNEVSRQKRSCPVDTNSGNSLVNEVSQKKPCHVANNDDDFE 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00010 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 794 IPR027417 -
Trre9g00010 923 MobiDBLite consensus disorder prediction 1 29 - -
Trre9g00010 923 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 519 677 IPR001650 -
Trre9g00010 923 FunFam DNA repair and recombination protein RAD54-like 509 677 - -
Trre9g00010 923 SMART helicmild6 546 630 IPR001650 -
Trre9g00010 923 SMART ultradead3 157 360 IPR014001 -
Trre9g00010 923 Gene3D - 402 708 IPR027417 -
Trre9g00010 923 Gene3D - 424 693 - -
Trre9g00010 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 402 IPR027417 -
Trre9g00010 923 FunFam DNA repair and recombination protein RAD54 130 401 - -
Trre9g00010 923 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 352 IPR014001 -
Trre9g00010 923 Gene3D - 138 401 IPR038718 -
Trre9g00010 923 FunFam Predicted protein 424 498 - -
Trre9g00010 923 CDD DEXHc_RAD54 161 402 - -
Trre9g00010 923 CDD SF2_C_SNF 513 641 - -
Trre9g00010 923 PANTHER SNF2/RAD54 FAMILY MEMBER 49 800 - -
Trre9g00010 923 Pfam SNF2-related domain 164 470 IPR000330 GO:0005524|GO:0140658
Trre9g00010 923 Pfam Helicase conserved C-terminal domain 521 629 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00010 Trre-Chr9 230589 238855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00010 510 688 RAD5 or RAD16-like Gene Family AT5G43530 34.444 1.97e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre9g00010 SNF2_N 1.2e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00010 K10875 - gmx:100781631 1344.72