Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05947 ATGGCGAGGCTAGAGAAGGATGGCACAAATAAAAGCCTAGAGAGTCTAATGGACTCTCACAAACCAGGAACCACAACAAATGGGAACCAACTCAGGCCCCAGAAGTCCATTCCTGGATACGGCCTGGAATTCACTAACCTCTCATATAGTATCATAAAGAAGCTGAAAAAGGACGGAGTTTGGATCAACAAAGAAGCATATCTTCTTCATGATATATCTGGCCAGGCAGTAAAAGGTGAAATCATGGCAATCATGGGTCCTAGTGGTGCTGGAAAATCTACCTTTCTTGATGCCTTGGCGGGTCGAATTGCTAAAGGGAGTCTAGAAGGATCGGTTAGAATTGATGGAAAGCCGGTAACTACGAGCTACATGAAAATGGTGTCATCATATGTGATGCAAGATGACCAGCTCTTCCCTATGTTGACAGTTTTTGAAACATTTATGTTTGCAGCAGAAGTTAGGCTTCCTCCTTCTATTTCCAGGGACGAAAAAAAGAAGAGGGTTCATGAGCTCCTTGATAAACTGGGCTTACAGAGTGCTACACATACCTATATTGGTGACGAGGGAAGGAGAGGAGTGTCGGGAGGTGAACGAAGAAGGGTATCTATCGGCATAGAGATCATTCATAAGCCATCGCTTCTTTTTCTAGACGAACCTACCTCAGGACTTGATTCTACAAGTGCTTACAGTGTAGTGGAAAAGATTAAAGACATAGCTCAGGGTGGTAGCATTGTCCTCATGACCATACACCAGCCTTCATTTAGAATTCAAATGCTCCTCGACAAGATCACTGTCCTCGCAAGGGGAAGATTGATATACATGGGAAGGCCAGATGCACTTCACACTCACCTTTCCGGATTTGGAAGGCCTGTACCTGATGGAGAAAACAGTATTGAGTATCTCCTAGATGTTATAACTGAATATGATCAAGCAACGGTTGGACTTGACCCTCTTGTTCAATACCAACACGATGGTAATAAACCTGACCCAGCAACCATGACCCCAGTTCCAAAACCTCCAGGTACACCTTATAGAAGGAACACCCCAGCATCTAAACACATGATTAGTCTGCGCAGCCAAGGGTTTACTGCTGGTACACCACAGCCTGATTCTGCACAATTTGGTCTTGATGATGAGGAAGACGATGATGAAAATTTTGATAACTCCCTTGAAAGGAGAAGTGTTAAAACAACAAGGAACACTGTAACCAGTGGTGTTTATCCACGTTTAGCTTCTCACTTCTACCAAGATTTCTCAGCCAAAGATTTCTCTGTTTGGCTTTACAATGGTGTAGTAGGAACCCCACGTCGCCATCCATCATGGACTCCTGCAAGAACTCCAGCATGGACACCTGGGAAAACACCCCTGTCAGGACCAAGAAGTTTTATTTCCAACCAACATTCTGCATCTTATCAGGATCATTATTATCTCCAAAAAACTCATTTGGCGGTTAGCCAGTCTATGGATTACTCTGCAACTTCATATGCACCTTCTTATGAAGAGTTTGAGATTGAGGAAGTGCTCGATGAGCCGGACCTTGGACCTAAGTATGCAAACCCATGGTTGCGTGAGGTTGCAGTGCTCTCATGGCGAACCGTACTCAATGTAATTCGCACTCCAGAACTCTTTGCCTCTCGTGAGATTGTGCTGACTGTTATGGCACTTGTCTTATCCACCATTTTCAATAACCTGGGTGATACTACTTTCAAAGACATCAATAGGCTCCTCAATTTCTACATCTTTACGGTGTGCCTTGTTTTCTTTTCTTCCAATGATGCAGTCCCATCTTTTATCAATGAAAGGTTCATCTTCATCAGGGAAACATCCCACAATGCTTACCGTGCTTCTTCATATGTAATATCTTCCCTCATTGTTTACCTCCCATTTTTTGCCGTTCAAGGCCTAACGTTTGCTGTCATAACCAAATTAATGCTCCACTTGAAAAGCGATCTCTTCAATTTCTGGATGATACTATTTTCCTCCCTCATTACTACCAATGCATATGTGATGCTTGTTAGCGCACTTGTTCCTAGTTACATCACAGGCTATGCAGTAGTCATTGCCACAACAGCACTCTTCTTTTTGACTTGTGGTTTCTTCCTCAAACGAACTCAGATACCCGCATACTGGAAGTGGCTCCATTATATTTCTGCAATCAAATACCCATTTGAGGGATTGCTGATAAATGAATTTAAGAATGATCGCGGCTGCTACACAGGAAACAAAGCAGATTTATCCCCAGGACCTTTAGGGGACGTGAAGCCTAGCAAACACCACAATGCCAGTCTGCCCCTTAACTGCTTATTAGGAGAAGACGTCTTGTCCACAATGGATATTACAATGGAAAGCCTATGGTATGACATCTTAATCCTGCTAGCTTGGGGTATTCTTTACAGGTTCTTCTTCTACCTGGTTTTGAGATTCTACTCCAAGAATGAAAGGAAATGA 2448 0.4322 MARLEKDGTNKSLESLMDSHKPGTTTNGNQLRPQKSIPGYGLEFTNLSYSIIKKLKKDGVWINKEAYLLHDISGQAVKGEIMAIMGPSGAGKSTFLDALAGRIAKGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVHELLDKLGLQSATHTYIGDEGRRGVSGGERRRVSIGIEIIHKPSLLFLDEPTSGLDSTSAYSVVEKIKDIAQGGSIVLMTIHQPSFRIQMLLDKITVLARGRLIYMGRPDALHTHLSGFGRPVPDGENSIEYLLDVITEYDQATVGLDPLVQYQHDGNKPDPATMTPVPKPPGTPYRRNTPASKHMISLRSQGFTAGTPQPDSAQFGLDDEEDDDENFDNSLERRSVKTTRNTVTSGVYPRLASHFYQDFSAKDFSVWLYNGVVGTPRRHPSWTPARTPAWTPGKTPLSGPRSFISNQHSASYQDHYYLQKTHLAVSQSMDYSATSYAPSYEEFEIEEVLDEPDLGPKYANPWLREVAVLSWRTVLNVIRTPELFASREIVLTVMALVLSTIFNNLGDTTFKDINRLLNFYIFTVCLVFFSSNDAVPSFINERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAVITKLMLHLKSDLFNFWMILFSSLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPAYWKWLHYISAIKYPFEGLLINEFKNDRGCYTGNKADLSPGPLGDVKPSKHHNASLPLNCLLGEDVLSTMDITMESLWYDILILLAWGILYRFFFYLVLRFYSKNERK 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05947 815 SMART AAA_5 78 278 IPR003593 GO:0016887
Trre8g05947 815 MobiDBLite consensus disorder prediction 361 393 - -
Trre8g05947 815 Pfam ABC transporter 69 221 IPR003439 GO:0005524
Trre8g05947 815 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 18 802 - -
Trre8g05947 815 MobiDBLite consensus disorder prediction 1 34 - -
Trre8g05947 815 Gene3D - 42 287 IPR027417 -
Trre8g05947 815 CDD ABCG_EPDR 42 275 - -
Trre8g05947 815 MobiDBLite consensus disorder prediction 15 34 - -
Trre8g05947 815 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524|GO:0016887
Trre8g05947 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 284 IPR027417 -
Trre8g05947 815 Pfam ABC-2 type transporter 525 731 IPR013525 GO:0016020|GO:0140359
Trre8g05947 815 MobiDBLite consensus disorder prediction 321 349 - -
Trre8g05947 815 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 293 IPR003439 GO:0005524
Trre8g05947 815 FunFam ABC transporter G family member 6 57 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05947 Trre-Chr8 59743382 59746464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05947 68 294 Calmodulin-binding Proteins AT2G36910 27.826 2.44e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05947 K05681 - gmx:100819497 1313.52