Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05937 ATGTCTTCTGCTGTTTTAGAGCACTTGTTGGATGTGGATGAACAGGAGGAGCAGCAGCAGCAGCACAAATTCAAGATTAAAAATCTGAGAAAAGAATCCGATGATGGGAAAATTCAAATACTGAAAGGCATCACCGTTGACATCCCAAAGGGTGTGATTGTTGGGATCATAGGCCCTAGTGGCAGCGGCAAGTCAACTCTCTTGAGGGCTTTGAATCGCCTCTGGGAGCCACCTTCCTCCTCCGTCTTCCTCGATGGCCAAGACATCTGCCACCTTGACGTCCTTTCCCTCCGCCGCAAGGTTGCCATGCTCTTTCAGCTCCCTGCTCTCTTTGAAGGGACAGTTGCGGAGAATGTGAGGTATGGTCCACAACTTAGAGGAATAAAGCTAACAGATGATGAGGTGCGGAAGTTGCTCATAATGGCAGACCTTGATTCTTCTTTCATGGATAAGTCTGGTGCTGACCTCTCTGTGGGTCAGGCTCAAAGAGTTGCACTTGCCAGAACTCTAGCTAACTCACCTGAGGTTTTGCTGCTGGATGAGCCTACTAGTGCATTAGATCCAATATCCACAGAAAACATAGAAGGTGCCTTGATGAAGTTGAACAAGAATCAGGGCATGACACTCATCATGGTTTCTCATAGCATCAAACAAATCCAGAGGATGGCTGACGTTGTGTGTTTGCTTGTTGATGGTGAAATTGTTGAAGTTCTTAAGCCTAATCAACTCTCTCAAGCTAAGCATCCCATGGCAAGGAGGTTTCTTGAACTCAGTTCTTAA 780 0.4654 MSSAVLEHLLDVDEQEEQQQQHKFKIKNLRKESDDGKIQILKGITVDIPKGVIVGIIGPSGSGKSTLLRALNRLWEPPSSSVFLDGQDICHLDVLSLRRKVAMLFQLPALFEGTVAENVRYGPQLRGIKLTDDEVRKLLIMADLDSSFMDKSGADLSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEGALMKLNKNQGMTLIMVSHSIKQIQRMADVVCLLVDGEIVEVLKPNQLSQAKHPMARRFLELSS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05937 259 Pfam ABC transporter 41 184 IPR003439 GO:0005524
Trre8g05937 259 Gene3D - 19 258 IPR027417 -
Trre8g05937 259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 256 IPR003439 GO:0005524
Trre8g05937 259 FunFam ABC transporter, ATP-binding protein 21 254 - -
Trre8g05937 259 SMART AAA_5 50 240 IPR003593 GO:0016887
Trre8g05937 259 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 4 258 IPR005670 GO:0005315|GO:0016020|GO:0035435
Trre8g05937 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 246 IPR027417 -
Trre8g05937 259 Coils Coil 12 32 - -
Trre8g05937 259 CDD ABC_PstB_phosphate_transporter 24 243 IPR005670 GO:0005315|GO:0016020|GO:0035435
Trre8g05937 259 ProSitePatterns ABC transporters family signature. 156 170 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05937 Trre-Chr8 59696607 59698153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05937 38 243 Calmodulin-binding Proteins AT2G36910 33.019 4.65e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05937 K02068 - gmx:100791365 373.629