Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05922 ATGGCGCATCTAAGCGAACCGGCGAAGCTAAGGTGGGGAGAATTGGAGGAAGACGACGGTGAGGATCTCGATTTCCTTTTACCACCACGTCAGGTGATAGGTCCTGATGAAAATGGAATCAAAAGGGTTATTGAATACAAGTTCGATGATGACGGTAACAAGGTTAAGATCACAACAACCACTCGCACCCGCAAACTCGCCAACGCTCGTGTTAGCAAACGCGCCATCGAACGCCGTTCCTGGCCTAAATTCGGCGACGCCGTTCAGGAAGATGTCGGTGCCCGCCTCACTATGGTCTCCACTGAAGAGATCGTTCTCGAACGCCCCAAACCTATTGGTTCCAACAAGGAGGATGCAAACATTACCGACTCAATAGCTCAAGCTCAAAGAGGTGCTGTTCTTATGGTATGCAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCGTATAAGGATCTTGCACAGCCTGCTGAGGGTTTTGTTGATAAACCTCCAACAGCAGATGGTGCTGCTGCTGCTGCAGCTGGCCCGGGTAGGGGTACCTATGTACCGCCTAGCCTAAGAGCTGGTGCCGAGAGGACTACTGGGTCCGACATGAGGCGCAGGAATGATGAGAATTCTGTCCGGGTAACCAACCTCTCAGAAGATACAAGGGAACCTGATTTGCTTGAGCTGTTCCGGCCTTTTGGTGCTGTCAGCAGGGTCTATGTTGCTATTGATCAAAAGACTGGCATGAGTAGGGGATTCGGCTTTGTCAACTTTGTAAGCAGGGAAGATGCTCAAAGGGCTATTAACAAACTCAATGGATATGGCTATGACAATCTCATCCTCAGAGTTGAATGGGCCACCCCAAGAACAACCTAA 873 0.5029 MAHLSEPAKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKRVIEYKFDDDGNKVKITTTTRTRKLANARVSKRAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPKPIGSNKEDANITDSIAQAQRGAVLMVCRTCGKKGDHWTSRCPYKDLAQPAEGFVDKPPTADGAAAAAAGPGRGTYVPPSLRAGAERTTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTT 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05922 290 CDD eIF3G 38 155 IPR024675 -
Trre8g05922 290 PIRSF Transl_init_eIF-3_RNA-bind 1 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Trre8g05922 290 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Trre8g05922 290 MobiDBLite consensus disorder prediction 162 210 - -
Trre8g05922 290 CDD RRM_eIF3G_like 210 285 IPR034240 -
Trre8g05922 290 Gene3D - 183 290 IPR012677 -
Trre8g05922 290 FunFam Eukaryotic translation initiation factor 3 subunit G 173 290 - -
Trre8g05922 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Trre8g05922 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 19 286 - -
Trre8g05922 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 277 IPR000504 GO:0003723
Trre8g05922 290 SUPERFAMILY RNA-binding domain, RBD 197 289 IPR035979 GO:0003676
Trre8g05922 290 SMART rrm1_1 210 283 IPR000504 GO:0003723
Trre8g05922 290 Pfam Eukaryotic translation initiation factor 3 subunit G 31 156 IPR024675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05922 Trre-Chr8 59611281 59612366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05922 8 290 Eukaryotic Initiation Factors Gene Family AT3G11400 67.834 6.96e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05922 K03248 - gmx:100818725 496.123