Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05920 ATGGGAGGTGCAGCGGCAATCATATCCAAGACTGCAGTGGCACCCATTGAGAGAGTCAAACTTTTATTACAAAACCAAACTGAAATGATTAAAAGAGGACAGCTCAAAACACCATATCTGGGTCTCTCCAATAGCTTTAAGAGGGTCTTTCTCGAAGAGGGTCTCATTGCCTTTTGGAGAGGTCATCAGGCCAATGTTATAAGATATTTCCCCACACAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATCTTTGGATATTCCAAAGAGAAAGATGGCTACATTAAGTGGTTTGCTGGGAATGTGGCTTCAGGCAGTGCAGCAGGAGCTACTACTTCGATGCTTTTGTACCATTTGGACTACGCACGTACAAGGTTGGCCACCGATGCAGTGGTGTGCCGCGTTACTGGTCAGCGTCAGTTTAAAGGACTAATTGACGTATATCGTAAAACCTTATCCACTGATGGAATTGCCGGCTTGTACAGAGGATTTGGGGTTTCAATATTGGGAATCACCTTGTATCGAGGGATGTACTTTGGGATCTATGACACCATGAAGCCTATTGTTTTAGTTGGGCCTTTTGAGGGGAACTTCTTTGCTAGTTTCTTGTTAGGTTGGAGCATCACAACTGTATCCGGTGTCTGTGCATACCCTTTTGACACATTGCGCCGGCGTATGATGCTAACATCCGGACACCAAAACAAGTATAATAGTGCAATGCATGCATTCCGTGAGATTGTTGGACAAGAGGGTTTCTTAGCTCTATTTCGAGGAGTCACCGCAAATATGCTTCTTGGAATGGCAGGAGCTGGGGTGCTTTCTGGGTACGATCAACTAAACCGTATCTCATCTAGACACAGCCACTGA 873 0.4467 MGGAAAIISKTAVAPIERVKLLLQNQTEMIKRGQLKTPYLGLSNSFKRVFLEEGLIAFWRGHQANVIRYFPTQAFNFAFKGYFKSIFGYSKEKDGYIKWFAGNVASGSAAGATTSMLLYHLDYARTRLATDAVVCRVTGQRQFKGLIDVYRKTLSTDGIAGLYRGFGVSILGITLYRGMYFGIYDTMKPIVLVGPFEGNFFASFLLGWSITTVSGVCAYPFDTLRRRMMLTSGHQNKYNSAMHAFREIVGQEGFLALFRGVTANMLLGMAGAGVLSGYDQLNRISSRHSH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05920 290 PRINTS Mitochondrial carrier protein signature 163 181 IPR002067 GO:0055085
Trre8g05920 290 PRINTS Mitochondrial carrier protein signature 113 131 IPR002067 GO:0055085
Trre8g05920 290 PRINTS Mitochondrial carrier protein signature 207 229 IPR002067 GO:0055085
Trre8g05920 290 PRINTS Mitochondrial carrier protein signature 61 81 IPR002067 GO:0055085
Trre8g05920 290 PRINTS Mitochondrial carrier protein signature 11 25 IPR002067 GO:0055085
Trre8g05920 290 FunFam ADP,ATP carrier protein ER-ANT1 1 290 - -
Trre8g05920 290 PRINTS Adenine nucleotide translocator signature 203 219 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre8g05920 290 PRINTS Adenine nucleotide translocator signature 39 60 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre8g05920 290 PRINTS Adenine nucleotide translocator signature 72 84 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre8g05920 290 PRINTS Adenine nucleotide translocator signature 98 111 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre8g05920 290 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 1 287 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Trre8g05920 290 Pfam Mitochondrial carrier protein 1 88 IPR018108 -
Trre8g05920 290 Pfam Mitochondrial carrier protein 199 284 IPR018108 -
Trre8g05920 290 Pfam Mitochondrial carrier protein 99 190 IPR018108 -
Trre8g05920 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 98 190 IPR018108 -
Trre8g05920 290 Gene3D Mitochondrial carrier domain 1 289 IPR023395 -
Trre8g05920 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 86 IPR018108 -
Trre8g05920 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 284 IPR018108 -
Trre8g05920 290 SUPERFAMILY Mitochondrial carrier 2 281 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05920 Trre-Chr8 59598520 59599882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05920 1 288 Antiporters AT5G17400 77.083 1.38e-160 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05920 K05863 - gmx:100798418 520.776