Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05916 ATGTGGATGGTTGGTTACAATGAAGGTAGTGACTTCAACATGTCTGATTATCCATTCAATGGAAGGAAACTCAGGCCCCTCATTCCAAGACCAGTTACTACTACTACTACTAACAACAACACTTCAACTACAACTCCTTCCTTAAACCGCATTCATGGCGGCCATGATTTCTTTTCACAATATCACAATCTCCAGGTGGGAGATCAGAGCAAGAGATCATCAGAGTTGAATAGTTCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGTAGTGAGTTCAAGATGGAATCCAACACCAGAACAGTTAAGAGCGCTTGAAGAGTTGTATAGAAGAGGAACAAGAACACCATCTGCTGAACAAATCCAACAAATCACTGCACAGCTTAGAAGGTTTGGAAAAATTGAAGGCAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAGAAACGACGCCGTCAAATGGAATCAGCTGCTGATCACTTTGATGCTAGTGCTACTACTCTTGAAAAGAAAGACTTATTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACACACCAAAAACTGGCTACCCTCTACAAATTCCAGTACTAGTACTCTTCCTCTTGCAGAGGAATCTGTTTCAATTCAAAGGGCAGCAGCAGCAGCAGCAAAAGTAGATCAGTACTCTACAAGAACAGATGGATGGGTCCAATTCGATGAGGCAGCAGAATTACAACAAAGAAGAAACTTTATGGAAAGGAATGCCACGTGGCACATGATGCAGTTAACTACTTGTCCTACCCTCATTAACACTACTACTACTACTACACACCAAAATCCTAATTACACCTCCCCTACTACAGCTATAACAACAGCAGCTAGCATGGCCACCACTACCACAGTAACAACTAGCCTTATGGACCCAAAACTCATGATCAAGACTCATCATGATCTCAGCTTATTCATTTCACCTCACACTCACATTCACACACAAACACATAGACAAAATGGTTTTAATAATATCCAATTAAGCAACACTGCTCATCATCACCAGGATGATCATTGTTTGGAATCTGATCAAACCCTTCAACTTTTCCCAATAAGGAATGGTGGTGGTAGAGATCAAGATAATGATCATCGACATAATAACATTATTATTAACCAACAACACAAAGAGACAGAGATATCAACTTCAGAAATGAATGCACCCAACCAGTTTATTGAATTTCTTCCGTTGAAGAACTAA 1236 0.407 MWMVGYNEGSDFNMSDYPFNGRKLRPLIPRPVTTTTTNNNTSTTTPSLNRIHGGHDFFSQYHNLQVGDQSKRSSELNSSAAAAAAAAVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAADHFDASATTLEKKDLLGASRTVFEVEHTKNWLPSTNSSTSTLPLAEESVSIQRAAAAAAKVDQYSTRTDGWVQFDEAAELQQRRNFMERNATWHMMQLTTCPTLINTTTTTTHQNPNYTSPTTAITTAASMATTTTVTTSLMDPKLMIKTHHDLSLFISPHTHIHTQTHRQNGFNNIQLSNTAHHHQDDHCLESDQTLQLFPIRNGGGRDQDNDHRHNNIIINQQHKETEISTSEMNAPNQFIEFLPLKN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05916 411 SMART HOX_1 89 156 IPR001356 GO:0003677
Trre8g05916 411 Pfam Homeodomain 92 151 IPR001356 GO:0003677
Trre8g05916 411 SUPERFAMILY Homeodomain-like 92 158 IPR009057 -
Trre8g05916 411 Gene3D - 90 151 - -
Trre8g05916 411 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 75 404 IPR044555 GO:0003700|GO:0099402
Trre8g05916 411 CDD homeodomain 93 153 IPR001356 GO:0003677
Trre8g05916 411 ProSiteProfiles 'Homeobox' domain profile. 97 152 IPR001356 GO:0003677
Trre8g05916 411 FunFam WUSCHEL-related homeobox 4 91 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05916 Trre-Chr8 59579627 59582120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05916 1 411 Wox Gene Family AT3G18010 37.850 8.55e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre8g05916 Homeodomain 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05916 - - psat:127106827 467.618