Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05905 ATGGATTCCTCCTCAACTTCTTTCTTTGATCTTCATCCTCCTCAACCACCCACCACCGTCCCCTTCACCACCCTCCAACAACAACAGCAACCGCACTATACTCCCACCCATCCTCCTTATGCTGAGATGATATACAAAGCAATAGAGGCACTGAAAGAGAAAGACGGATCAAGTAAAAGAGCAATTGGAAAGTACATAGAGCATGTCTACAAACAAGTTCTTCCACCACAACACGCCACTTTGTTAACACAACACCTCAACCACTTGAAATCTGCAGGTCTTCTCATCATGGTCAAAAAATCATACAAACTACCTTCCTCACTCCCACCACCACCCACTCTTACTAGATCTGGTGACCACTCTGAATCACATCTCCCTTTCACTCCCTTAACCACCCAAAGGGGCCGTGGTCGTCCTCCTAAGCCCAAACCACAACAACAAAATGTCTTCCTTTCTCTCCAAACTACTACTGCTGCTACTGCTGTACCTCCACCTCCTACAACAACAACAGCAACAACGACTGATGTGGCCCCCGTGCAGCAGCAGCAGCAGCCTCCTGCTTCAGTCAGAAGAGGCCGCGGACGCCCGCCTGGGACCTTCAGATCTAAGACACTGAAGAGGCCTGGCCGTCCTCCTAAGCCCAAATCTGTCTCTAATGGTCTCAAACGACGTCCCGGACGCCCGCCTAAACAACAAACAACTGACATTCCTTTTGCTGCTGTTCCCTTTCCTTCTATTGTTCCAGACCAGCAGCCTAGATCTACCAGGCCCAGAGGCAGGCCCAAGAAGTATGCAGATGCCGTGGTTGCTCGTCCTCCCAACCTTGCTGTTGTAGGTAGTAGGCCCAAGAATTCCTCGGGAAGGCCCGTTGGACGCCCAAAGGGATCAAAAGCTGCAAAAAAGCTTGCTGATGAAGATCTAAGAAAGAAACTTGAACACTTTAAATCAAAAATTAAGGAGTCTCTTGACGTGCTTAAGCCTTATTTTGTTCAAGAAAGTCCAGCCACTGCAGTTGCAGCAATCAAAGAGTTGGAAATACTGGCAACTCTGGACCTTAAAGCACCATTAAGAGATGAAACACAGCAACTACAGCCAGTGTTGGAACAGCCACAGCCGGAACAACCACCGGAACAGCCACAGCCTGAACAACAGCTACCACCACCTCAGCAACTGCATCCCCAGCTAGTGCCGCAGGCGCAGATTTATGAACAGCAATATCTCCAGATGCCATTCCAGCCACAGGTGCAGCAACTTTTTCAACCACATACTTTAGCGCCGAGCTAG 1284 0.493 MDSSSTSFFDLHPPQPPTTVPFTTLQQQQQPHYTPTHPPYAEMIYKAIEALKEKDGSSKRAIGKYIEHVYKQVLPPQHATLLTQHLNHLKSAGLLIMVKKSYKLPSSLPPPPTLTRSGDHSESHLPFTPLTTQRGRGRPPKPKPQQQNVFLSLQTTTAATAVPPPPTTTTATTTDVAPVQQQQQPPASVRRGRGRPPGTFRSKTLKRPGRPPKPKSVSNGLKRRPGRPPKQQTTDIPFAAVPFPSIVPDQQPRSTRPRGRPKKYADAVVARPPNLAVVGSRPKNSSGRPVGRPKGSKAAKKLADEDLRKKLEHFKSKIKESLDVLKPYFVQESPATAVAAIKELEILATLDLKAPLRDETQQLQPVLEQPQPEQPPEQPQPEQQLPPPQQLHPQLVPQAQIYEQQYLQMPFQPQVQQLFQPHTLAPS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05905 427 SMART AT_hook_2 287 299 IPR017956 GO:0003677
Trre8g05905 427 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Trre8g05905 427 SMART AT_hook_2 190 202 IPR017956 GO:0003677
Trre8g05905 427 SMART AT_hook_2 255 267 IPR017956 GO:0003677
Trre8g05905 427 SMART AT_hook_2 222 234 IPR017956 GO:0003677
Trre8g05905 427 CDD H15 34 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre8g05905 427 MobiDBLite consensus disorder prediction 145 188 - -
Trre8g05905 427 PRINTS AT-hook-like domain signature 253 263 IPR017956 GO:0003677
Trre8g05905 427 PRINTS AT-hook-like domain signature 188 199 IPR017956 GO:0003677
Trre8g05905 427 PRINTS AT-hook-like domain signature 133 143 IPR017956 GO:0003677
Trre8g05905 427 PANTHER HISTONE H1 21 232 - -
Trre8g05905 427 Pfam linker histone H1 and H5 family 37 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre8g05905 427 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 36 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre8g05905 427 MobiDBLite consensus disorder prediction 359 397 - -
Trre8g05905 427 FunFam Histone H1.2 33 114 - -
Trre8g05905 427 MobiDBLite consensus disorder prediction 369 393 - -
Trre8g05905 427 SUPERFAMILY "Winged helix" DNA-binding domain 31 111 IPR036390 -
Trre8g05905 427 SMART h15plus2 34 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre8g05905 427 MobiDBLite consensus disorder prediction 113 130 - -
Trre8g05905 427 Gene3D - 32 112 IPR036388 -
Trre8g05905 427 MobiDBLite consensus disorder prediction 105 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05905 Trre-Chr8 59498773 59501079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05905 43 109 Single Myb Histone (SMH) Gene Family AT1G49950 43.284 1.77e-08 53.9