Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05902 ATGGGTGGTGGAGGAACGATCGCGGAAGGGATTCGTCGCTTGTTTCAACGAGGACGCTCTTCAACTACTTCTTCAAGTAAGCATAATAATAATAATAATAATGATGACCGCGTCTTGGTGAAAGATTTGCGCTCACAGTTGGCCAATATTCCTACCACTAACCATCACGATCATCATCATCCTTCTGCTGCTGTTGCTGTTGCTGCTGCTCAATCTCTTTCCAACATCAAAGTCCCCATTTACGCTCCCTTCCCAACTTCTTCGTCCATGGATCCCAACAAAAAGGGTTCGCCTGAAACTGAGTTTTTTACTGAGTATGGAGAGGCAAGTCAATACCAGGTCCAAGAAATCATTGGAAAAGGCAGTTATGGCATCGTGTGTTCTGCAATTGACATTCATACTGGTGAAAAAGTTGCAATCAAGAAAATTAATGATGTTTTTGAGCATGTATCAGATGCCACAAGGATACTAAGAGAAATCAAGCTCTTGCGCTTGCTCCGACATCCTGATATTGTAGAAATTAGGCATATTATGCTTCCTCCTTCCCGCCGAGAGTTCAGAGATATCTATGTTGTGTTTGAGTTGATGGAATCTGATCTCCATCAAGTAATTAAGGCAAATGATGATCTTACTCCTGAGCACCACCAATTTTTCTTGTACCAACTTTTACGAGGCCTCAAATATATACATTCAGCAAATGTGTTTCACCGTGATTTGAAGCCAAAAAATATTCTTGCTAATGCTGATTGCAAACTGAAAATATGCGATTTTGGACTTGCTCGAGTTTCATTTAATGATGCCCCATCTGCTATATTCTGGACTGACTATGTTGCAACTAGGTGGTACCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAATATACCCCTGGAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTTACTGGTAGGCCATTGTTTCCCGGGAAAAATGTGGTGCACCAATTGGATATCATGACTGATTTGCTTGGCACTCCTCCCCCCGAGTCCATTGCAAGGATTCGAAATGAGAAAGCTAGAAGGTATCTTAATAGCATGCGAAAAAAGCAACCTGTTCCATTGACCCAGAAATTTCCAAATATAGATCCTTCGGCTCTTCGTATCCTGGAGCGCTTACTTGCATTTGATCCTAAAAACCGTCCATCAGCCGAAGAGGCATTGTCTGATCCTTATTTCCATGGTTTATCAAACATCGACCGCGAACCATCCACTCACCCCATTTCAAAACTTGAGTTTGAATTCGAGAGAAGGAAAGTGACTAAAGATGATGTCAGAGAGTTGATTTATCGAGAGATTTTGGAGTATCATCCCCAGATGCTTGAGGAATATCTACGTGGTGGAGACCAAACCAGCTTCATGTATCCAAGTGGGGTTGATCGATTCAAGAGACAGTTTGCACATCTTGAGGAACATTATGGGAAAGGTGAACGAAGCTCACCATTGCAGAGACAACATGCTTCCTTACCTAGAGAGCGAGTTCATACTTCCAAGAATGAAAATAATGAAAACAACGATATTGAAATGTCAACCGGACCAAATCTTCAGAGTCCACGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCTTCAAAGTGTATAGATGTGAAAAGAAGTAAAGATCAAGAGGAACCAATTATGGAGGTCAATGACGACGCAGCAGATGAATTGACAGATAACATTGCTGCCCTGCATGCTTAA 1728 0.4172 MGGGGTIAEGIRRLFQRGRSSTTSSSKHNNNNNNDDRVLVKDLRSQLANIPTTNHHDHHHPSAAVAVAAAQSLSNIKVPIYAPFPTSSSMDPNKKGSPETEFFTEYGEASQYQVQEIIGKGSYGIVCSAIDIHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIRHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHSANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPGIDIWSIGCIFAEMLTGRPLFPGKNVVHQLDIMTDLLGTPPPESIARIRNEKARRYLNSMRKKQPVPLTQKFPNIDPSALRILERLLAFDPKNRPSAEEALSDPYFHGLSNIDREPSTHPISKLEFEFERRKVTKDDVRELIYREILEYHPQMLEEYLRGGDQTSFMYPSGVDRFKRQFAHLEEHYGKGERSSPLQRQHASLPRERVHTSKNENNENNDIEMSTGPNLQSPRSLLKSASISASKCIDVKRSKDQEEPIMEVNDDAADELTDNIAALHA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05902 575 Gene3D Phosphorylase Kinase; domain 1 127 449 - -
Trre8g05902 575 FunFam Mitogen-activated protein kinase 427 449 - -
Trre8g05902 575 SMART serkin_6 112 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05902 575 Pfam Protein kinase domain 112 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05902 575 Gene3D Transferase(Phosphotransferase) domain 1 198 426 - -
Trre8g05902 575 MobiDBLite consensus disorder prediction 498 512 - -
Trre8g05902 575 MobiDBLite consensus disorder prediction 482 531 - -
Trre8g05902 575 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 111 453 - -
Trre8g05902 575 FunFam Mitogen-activated protein kinase 101 206 - -
Trre8g05902 575 MobiDBLite consensus disorder prediction 513 531 - -
Trre8g05902 575 MobiDBLite consensus disorder prediction 1 37 - -
Trre8g05902 575 FunFam Mitogen-activated protein kinase 198 426 - -
Trre8g05902 575 ProSitePatterns Protein kinases ATP-binding region signature. 118 142 IPR017441 GO:0005524
Trre8g05902 575 ProSiteProfiles Protein kinase domain profile. 112 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05902 575 MobiDBLite consensus disorder prediction 16 33 - -
Trre8g05902 575 CDD STKc_TDY_MAPK 111 448 - -
Trre8g05902 575 SUPERFAMILY Protein kinase-like (PK-like) 108 408 IPR011009 -
Trre8g05902 575 ProSitePatterns MAP kinase signature. 147 250 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05902 Trre-Chr8 59487578 59492509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05902 1 574 MAP Kinase Gene Family AT1G73670 68.220 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre8g05902 Pkinase 6.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05902 - - gmx:100780831 904.82