Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05889 ATGGTAGATCTCGAGGAGGACATTCGTTCTTTACAGCTTGACTCAGCAGCAGAAGACATTAATGGGGTGGTAAATCCAGAGGATGAGAAGCCAGATGTTGATAATTTTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCTCAGTCTGTTGAGGCCGAGCCAAAAGTGAAAGATAAGGAAATTCCTTCCGGTCAAGATGAAGAAGAAGAGCAGATGAAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGATGCTGGCAAATCTACAACTGGAGGTCAGATACTTTTCCTAAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTACATGGCCTATATTATGGACACAAATGAGGAGGAGAGAGTAAAGGGAAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGATACAACAAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTAGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAATTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCATTTTTACCAATATCGGGGCTCATGGGTTTAAACTTAAAAACAAGATTGGATAAAAGCCATTGTTCATGGTGGGATGGACCTTGCTTATTTGAAGCCCTTGATAGTATTGAAGTTCCTATGGGAGATCCCAAAAGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTACTATTAGGGATGGAGATTCCCTTTTGATCATGCCAAATAAGGATCATGTAAAAGTCGTTGCTATATATATCGATGAAAATCGGGTTAAATGCGCTGGACCTGGTGAAAATTTACGGGTTCGAGTATCTGGTGTTGAAGAAGAAGACCTATTGTCTGGGTTCGTCCTGTCTAGTGCTGCAAATCCAATATCAACAGTTACTGAGTTTGTTGCTCAATTGCAGATCCTTGAATTACTGGACAATGCTATTTTTACTGCTGGATACAAAGCTGTTCTGCACGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTATTGCAACAAATTGATCCAAAGACAAGGAAGCCTATAAAAAAGAAAGTTCTCTTTGTAAAGAATGGCGCTATTGTATTATGCCGTGTTCAGGTTAATAACGTGATCTGTGTTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTGGCTGTGGGGAAAGTCACTGCTCTCTGA 1509 0.4062 MVDLEEDIRSLQLDSAAEDINGVVNPEDEKPDVDNFDKMDEDPKQEVQAQSVEAEPKVKDKEIPSGQDEEEEQMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWSKERYDEIESKMVPFLKQSGYNVKKDVSFLPISGLMGLNLKTRLDKSHCSWWDGPCLFEALDSIEVPMGDPKSPFRMPIIDKFKDMGTVVMGKVESGTIRDGDSLLIMPNKDHVKVVAIYIDENRVKCAGPGENLRVRVSGVEEEDLLSGFVLSSAANPISTVTEFVAQLQILELLDNAIFTAGYKAVLHVHSVVEECEIVELLQQIDPKTRKPIKKKVLFVKNGAIVLCRVQVNNVICVEKFSDFPQLGRFTLRTEGKTVAVGKVTAL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05889 502 CDD eRF3_II 307 388 - -
Trre8g05889 502 MobiDBLite consensus disorder prediction 1 74 - -
Trre8g05889 502 SUPERFAMILY Translation proteins 300 392 IPR009000 -
Trre8g05889 502 PANTHER TRANSLATION FACTOR 69 501 - -
Trre8g05889 502 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 55 300 - -
Trre8g05889 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 311 IPR027417 -
Trre8g05889 502 PRINTS GTP-binding elongation factor signature 159 169 IPR000795 GO:0003924|GO:0005525
Trre8g05889 502 PRINTS GTP-binding elongation factor signature 80 93 IPR000795 GO:0003924|GO:0005525
Trre8g05889 502 PRINTS GTP-binding elongation factor signature 219 228 IPR000795 GO:0003924|GO:0005525
Trre8g05889 502 PRINTS GTP-binding elongation factor signature 175 186 IPR000795 GO:0003924|GO:0005525
Trre8g05889 502 Pfam Elongation factor Tu C-terminal domain 392 501 IPR004160 -
Trre8g05889 502 CDD eRF3_C_III 394 502 - -
Trre8g05889 502 Gene3D Translation factors 394 502 - -
Trre8g05889 502 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 396 501 IPR009001 -
Trre8g05889 502 CDD EF1_alpha 80 300 - -
Trre8g05889 502 FunFam Putative translation elongation/initiation factor family protein 394 502 - -
Trre8g05889 502 Pfam Elongation factor Tu domain 2 320 386 IPR004161 GO:0005525
Trre8g05889 502 MobiDBLite consensus disorder prediction 23 74 - -
Trre8g05889 502 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Trre8g05889 502 Pfam Elongation factor Tu GTP binding domain 76 278 IPR000795 GO:0003924|GO:0005525
Trre8g05889 502 Gene3D Translation factors 305 390 - -
Trre8g05889 502 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 304 390 - -
Trre8g05889 502 Gene3D - 57 300 IPR027417 -
Trre8g05889 502 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 76 305 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05889 Trre-Chr8 59414279 59422232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05889 76 502 Eukaryotic Initiation Factors Gene Family AT5G60390 38.140 5.54e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05889 K03267 - gmx:100793653 870.537