Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05888 ATGGTAGATCTCGAGGAGGACATTCGTTCTTTACAGCTTGACTCAGCAGAAGACATTAATGGGGTGGTAAATCCAGAGGATGAGAAGCCAGATGTTGATAATTTTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCTCAGTCTGTTGAGGCCGAGCCAAAAGTGAAAGATAAGGAAATTCCTTCCGGTCAAGATGAAGAAGAAGAGCAGATGAAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGATGCTGGCAAATCTACAACTGGAGGTCAGATACTTTTCCTAAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTACATGGCCTATATTATGGACACAAATGAGGAGGAGAGAGTAAAGGGAAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGATACAACAAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTAGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAATTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCATTTTTACCAATATCGGGGCTCATGGGTTTAAACTTAAAAACAAGATTGGATAAAAGCCATTGTTCATGGTGGGATGGACCTTGCTTATTTGAAGCCCTTGATAGTATTGAAGTTCCTATGGGAGATCCCAAAAGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTACTATTAGGGATGGAGATTCCCTTTTGATCATGCCAAATAAGGATCATGTAAAAGTCGTTGCTATATATATCGATGAAAATCGGGTTAAATGCGCTGGACCTGGTGAAAATTTACGGGTTCGAGTATCTGGTGTTGAAGAAGAAGACCTATTGTCTGGGTTCGTCCTGTCTAGTGCTGCAAATCCAATATCAACAGTTACTGAGTTTGTTGCTCAATTGCAGATCCTTGAATTACTGGACAATGCTATTTTTACTGCTGGATACAAAGCTGTTCTGCACGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTATTGCAACAAATTGATCCAAAGACAAGGAAGCCTATAAAAAAGAAAGTTCTCTTTGTAAAGAATGGCGCTATTGTATTATGCCGTGTTCAGGTTAATAACGTGATCTGTGTTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTGGCTGTGGGGAAAGTCACTGCTCTCTGA 1506 0.4057 MVDLEEDIRSLQLDSAEDINGVVNPEDEKPDVDNFDKMDEDPKQEVQAQSVEAEPKVKDKEIPSGQDEEEEQMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWSKERYDEIESKMVPFLKQSGYNVKKDVSFLPISGLMGLNLKTRLDKSHCSWWDGPCLFEALDSIEVPMGDPKSPFRMPIIDKFKDMGTVVMGKVESGTIRDGDSLLIMPNKDHVKVVAIYIDENRVKCAGPGENLRVRVSGVEEEDLLSGFVLSSAANPISTVTEFVAQLQILELLDNAIFTAGYKAVLHVHSVVEECEIVELLQQIDPKTRKPIKKKVLFVKNGAIVLCRVQVNNVICVEKFSDFPQLGRFTLRTEGKTVAVGKVTAL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05888 501 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 75 304 IPR000795 GO:0003924|GO:0005525
Trre8g05888 501 Gene3D Translation factors 393 501 - -
Trre8g05888 501 SUPERFAMILY Translation proteins 299 391 IPR009000 -
Trre8g05888 501 Gene3D - 56 299 IPR027417 -
Trre8g05888 501 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 303 389 - -
Trre8g05888 501 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
Trre8g05888 501 PANTHER TRANSLATION FACTOR 68 500 - -
Trre8g05888 501 MobiDBLite consensus disorder prediction 22 73 - -
Trre8g05888 501 MobiDBLite consensus disorder prediction 1 73 - -
Trre8g05888 501 FunFam Putative translation elongation/initiation factor family protein 393 501 - -
Trre8g05888 501 CDD eRF3_C_III 393 501 - -
Trre8g05888 501 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 395 500 IPR009001 -
Trre8g05888 501 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 54 299 - -
Trre8g05888 501 Gene3D Translation factors 304 389 - -
Trre8g05888 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 310 IPR027417 -
Trre8g05888 501 Pfam Elongation factor Tu GTP binding domain 75 277 IPR000795 GO:0003924|GO:0005525
Trre8g05888 501 Pfam Elongation factor Tu C-terminal domain 391 500 IPR004160 -
Trre8g05888 501 CDD EF1_alpha 79 299 - -
Trre8g05888 501 CDD eRF3_II 306 387 - -
Trre8g05888 501 Pfam Elongation factor Tu domain 2 319 385 IPR004161 GO:0005525
Trre8g05888 501 PRINTS GTP-binding elongation factor signature 174 185 IPR000795 GO:0003924|GO:0005525
Trre8g05888 501 PRINTS GTP-binding elongation factor signature 218 227 IPR000795 GO:0003924|GO:0005525
Trre8g05888 501 PRINTS GTP-binding elongation factor signature 79 92 IPR000795 GO:0003924|GO:0005525
Trre8g05888 501 PRINTS GTP-binding elongation factor signature 158 168 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05888 Trre-Chr8 59414279 59422232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05888 75 501 Eukaryotic Initiation Factors Gene Family AT5G60390 38.140 5.38e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05888 K03267 - gmx:100793653 875.159