Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05887 ATGGATCTCGAGGAGGACATTCGTTCTTTACAGCTTGACTCAGCAGAAGACATTAATGGGGTGGTAAATCCAGAGGATGAGAAGCCAGATGTTGATAATTTTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCTCAGTCTGTTGAGGCCGAGCCAAAAGTGAAAGATAAGGAAATTCCTTCCGGTCAAGATGAAGAAGAAGAGCAGATGAAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGATGCTGGCAAATCTACAACTGGAGGTCAGATACTTTTCCTAAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTACATGGCCTATATTATGGACACAAATGAGGAGGAGAGAGTAAAGGGAAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGATACAACAAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTAGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAATTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCATTTTTACCAATATCGGGGCTCATGGGTTTAAACTTAAAAACAAGATTGGATAAAAGCCATTGTTCATGGTGGGATGGACCTTGCTTATTTGAAGCCCTTGATAGTATTGAAGTTCCTATGGGAGATCCCAAAAGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTACTATTAGGGATGGAGATTCCCTTTTGATCATGCCAAATAAGGATCATGTAAAAGTCGTTGCTATATATATCGATGAAAATCGGGTTAAATGCGCTGGACCTGGTGAAAATTTACGGGTTCGAGTATCTGGTGTTGAAGAAGAAGACCTATTGTCTGGGTTCGTCCTGTCTAGTGCTGCAAATCCAATATCAACAGTTACTGAGTTTGTTGCTCAATTGCAGATCCTTGAATTACTGGACAATGCTATTTTTACTGCTGGATACAAAGCTGTTCTGCACGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTATTGCAACAAATTGATCCAAAGACAAGGAAGCCTATAAAAAAGAAAGTTCTCTTTGTAAAGAATGGCGCTATTGTATTATGCCGTGTTCAGGTTAATAACGTGATCTGTGTTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTGGCTGTGGGGAAAGTCACTGCTCTCTGA 1503 0.4059 MDLEEDIRSLQLDSAEDINGVVNPEDEKPDVDNFDKMDEDPKQEVQAQSVEAEPKVKDKEIPSGQDEEEEQMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWSKERYDEIESKMVPFLKQSGYNVKKDVSFLPISGLMGLNLKTRLDKSHCSWWDGPCLFEALDSIEVPMGDPKSPFRMPIIDKFKDMGTVVMGKVESGTIRDGDSLLIMPNKDHVKVVAIYIDENRVKCAGPGENLRVRVSGVEEEDLLSGFVLSSAANPISTVTEFVAQLQILELLDNAIFTAGYKAVLHVHSVVEECEIVELLQQIDPKTRKPIKKKVLFVKNGAIVLCRVQVNNVICVEKFSDFPQLGRFTLRTEGKTVAVGKVTAL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05887 500 CDD EF1_alpha 78 298 - -
Trre8g05887 500 PRINTS GTP-binding elongation factor signature 217 226 IPR000795 GO:0003924|GO:0005525
Trre8g05887 500 PRINTS GTP-binding elongation factor signature 157 167 IPR000795 GO:0003924|GO:0005525
Trre8g05887 500 PRINTS GTP-binding elongation factor signature 78 91 IPR000795 GO:0003924|GO:0005525
Trre8g05887 500 PRINTS GTP-binding elongation factor signature 173 184 IPR000795 GO:0003924|GO:0005525
Trre8g05887 500 PANTHER TRANSLATION FACTOR 67 499 - -
Trre8g05887 500 MobiDBLite consensus disorder prediction 21 72 - -
Trre8g05887 500 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 302 388 - -
Trre8g05887 500 Gene3D - 55 298 IPR027417 -
Trre8g05887 500 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 130 145 IPR031157 -
Trre8g05887 500 Gene3D Translation factors 392 500 - -
Trre8g05887 500 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 394 499 IPR009001 -
Trre8g05887 500 CDD eRF3_II 305 386 - -
Trre8g05887 500 SUPERFAMILY Translation proteins 298 390 IPR009000 -
Trre8g05887 500 Pfam Elongation factor Tu C-terminal domain 390 499 IPR004160 -
Trre8g05887 500 Gene3D Translation factors 303 388 - -
Trre8g05887 500 CDD eRF3_C_III 392 500 - -
Trre8g05887 500 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 74 303 IPR000795 GO:0003924|GO:0005525
Trre8g05887 500 FunFam Putative translation elongation/initiation factor family protein 392 500 - -
Trre8g05887 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 309 IPR027417 -
Trre8g05887 500 Pfam Elongation factor Tu GTP binding domain 74 276 IPR000795 GO:0003924|GO:0005525
Trre8g05887 500 Pfam Elongation factor Tu domain 2 318 384 IPR004161 GO:0005525
Trre8g05887 500 MobiDBLite consensus disorder prediction 1 72 - -
Trre8g05887 500 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 53 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05887 Trre-Chr8 59414279 59423114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05887 74 500 Eukaryotic Initiation Factors Gene Family AT5G60390 38.140 5.33e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05887 K03267 - gmx:100793653 876.7