Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05870 ATGGCCTTTTCCACTGAGATTGATCACCTTCCCTACCGATTCCCAGAGGGTTTAAGAGTCTTTGTCATTGATCATGACACCACTCAACTCAATGCCATTGTGGATATGTGCTTTCAATGCAACTATGAAGTTACCACATGCACTATGGCTTCTTTTGCCATTCATCTTTTGAGAGAAACAAAGGGTTCGTTTGATGTGATAGTAATTGAAGCTCAAATGCCGGACATGGATTCCTACGATTTTGTGCGACTTGTTACGCAAGAAATCAAAATTCCAGTGATTATGATGGGTGTTGATGATGACACAACAAGTGCAAGGATGAAGGCTATTGAAAAAGGGGCTTGTGAATATTGGGTTAAACCTTTGAATGTGAATCATATCAACAACATGTGGCAACATGTTGTAACGATTCAACAACATGATCAAATTCTTAGAATCTTGGAGGTAAAAACAGGACAAAAAATAATGAAGAGAGATGAAAGTGCAACAAAAGAAACAAATGCTTGTGTTCTTGAAAAACCTAGTGATGATAATCATCATTATCAACCTCCAACAAAGAAGAATCGTTTATCATGGTCACAAGAACTTCATGAAAAATTTCTAAGAGCTGTGAATCAACTTGGCATGGATAAGGCAAAGCCAAGAAAAATTGTTGAATTGATGGATGTTCCGGGTTTGACAAGAGCGCATGTTTCGAGCCATTGGCAGAAATTGAGACTTGGTATGAAGAGTTCAAGTAATAAAAAGAGAAAGTTAAAGAATGGAATGTCAAAAAGTGGAAAGCAGGATGAATATGATGTTCCTAATAATAATGAAAGGCTTGAAGTTGTTAAGTCAATGGCTGCTGCAGAACAGGACCAAAATGTTGTACTGAATTCAGCTGAAGCCATACAATGTGATAACAAGTTTCTTGCACAACAACAGGATCCTAATGTGTTTGATGATTTTGAAGTTTCCAATATGTTGATCACTAACAATACCAACATGATGCTAGATGATCCACCAACACTATTATATGATGAAGCATGGCAATCATCTGAATATGGCACATTTGGTTGGTGTTAG 1065 0.3718 MAFSTEIDHLPYRFPEGLRVFVIDHDTTQLNAIVDMCFQCNYEVTTCTMASFAIHLLRETKGSFDVIVIEAQMPDMDSYDFVRLVTQEIKIPVIMMGVDDDTTSARMKAIEKGACEYWVKPLNVNHINNMWQHVVTIQQHDQILRILEVKTGQKIMKRDESATKETNACVLEKPSDDNHHYQPPTKKNRLSWSQELHEKFLRAVNQLGMDKAKPRKIVELMDVPGLTRAHVSSHWQKLRLGMKSSSNKKRKLKNGMSKSGKQDEYDVPNNNERLEVVKSMAAAEQDQNVVLNSAEAIQCDNKFLAQQQDPNVFDDFEVSNMLITNNTNMMLDDPPTLLYDEAWQSSEYGTFGWC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05870 354 SUPERFAMILY CheY-like 16 140 IPR011006 -
Trre8g05870 354 Pfam Myb-like DNA-binding domain 190 238 IPR001005 -
Trre8g05870 354 Gene3D - 184 244 - -
Trre8g05870 354 NCBIfam myb-like DNA-binding domain, SHAQKYF class 187 240 IPR006447 GO:0003677
Trre8g05870 354 SMART REC_2 18 131 IPR001789 GO:0000160
Trre8g05870 354 SUPERFAMILY Homeodomain-like 185 243 IPR009057 -
Trre8g05870 354 Gene3D - 15 142 - -
Trre8g05870 354 MobiDBLite consensus disorder prediction 242 269 - -
Trre8g05870 354 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 267 IPR045279 GO:0009736
Trre8g05870 354 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Trre8g05870 354 CDD REC_typeB_ARR-like 20 135 - -
Trre8g05870 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 243 IPR017930 -
Trre8g05870 354 FunFam Two-component response regulator 183 246 - -
Trre8g05870 354 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05870 Trre-Chr8 59309920 59311347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05870 1 247 Response Regulator Gene Family AT4G31920 36.842 1.10e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre8g05870 Response_reg 1.9e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05870 - K14491 tpra:123913552 491.5