Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05869 ATGCATCCTAACTCAGTGGCAGCAGTGGTATCGTCTCCTCGTTATCATTATCATAATGAGACAACTGATCTCCCGCACGTGCCTGGTTCCAAACTCCGCCTTTTGTGCAGCTACGGCGGCCACATCATGCCACGTGACAACTCCCTCTACTATGTAGGCGGAGACACTCGCATTGTGGCTGTGGACCGCCATTCATCCTTAACACACCTCTGTGCTCACCTCTCTCGCAATCTCCTTCATGGAAGAAGATCATTCACTCTTAAGTACCATCTTCCCAATGAAGACCTTGACAATCTCATCACTGTTTCAACCGATGAAGACCTCCAAAACATGATCGAAGAGTATGATCGTTTGTCTTCAAACCCTTCCCCCTCCCCTTCTCGACTCAGATTATTCCTCTTTTTCTCTAAACCAGAAACTGCTGTTTCCATGGACACTCTCCACCATGACTCTAATCAATCATGGTTCGTGGAAGCTCTCAACAACTCAGGGATTCTCTCTCGAGTTGTTTCTGATTCTGCTGCAGTTGTTGATAATTGCCTCCTCAACCTTGATGATTATGAAGCAAGTGCTTCTAGCTGCAACGACGAAAATATTAATAATAATGTTAACAAGGAGCATTTAATTGATGTGGATTATTCCGTACCTGTGGACGAGGAGGACAAAATGTTTAATTATTCATTTGATAATCTTCCTCAAATACGAGTTCGCGCTGATGAACAAAGGATTGTTCAGATGGAGCAGCAGCAGGATAATAACTTTGGCGATGTAAAAGTGGCGAACGTGAAGCAAGATGATGCTTTTCTTGTGCAATCACAGGTCAAAAGTGATCAAAATCAGCAAGAGGAACAAGTAAACAATTCTACTTACACCTCACCCCAACAAAAACCGGATCAAAATCCGCAACAACCTGCAACATATCAACATCAATTTGTCTATATTCACCGTCCTATAGGAACAGGTCAAGTGCCAATATCATCATACTACCCTTATTATGCACCACAATCACACCAACAACTTAATCAGTTCCCAGTTTATGTGATGCCTATTGGAGTTGGATCTACACAACCATACAACATGGCTTTGCAATCCAATATAGCCGACACAAATGTAGTAGCCTCAGTTAGGCCACAAATACCACAAAGTGTTGTACCTGAAATGACTCCAAGTGTTTATAAAGCTCCTGTGGCATCATCAAATTCTGGTTTTATTCAAATACCTTCCAACCAATTTCAGCAGCAATATATGAATTTGTCTCAAAATATTCATCATCCACCACACCCTATTTATGGTTATGATTATGGTAGAGCTATACAAGAACAAGTATACTCTACACAAACACAACAACAGCATTCAAATGCAAATGCACCCTCTCAGTACCAATCCATGACCCCGGCAGTTGCTGGAGCAGCAATATCAGATGTTCCAAAACAATTTCCTATAGATAACATTCAGCAGCCAAACAAAAACTCACAGCAAGTATGA 1485 0.4175 MHPNSVAAVVSSPRYHYHNETTDLPHVPGSKLRLLCSYGGHIMPRDNSLYYVGGDTRIVAVDRHSSLTHLCAHLSRNLLHGRRSFTLKYHLPNEDLDNLITVSTDEDLQNMIEEYDRLSSNPSPSPSRLRLFLFFSKPETAVSMDTLHHDSNQSWFVEALNNSGILSRVVSDSAAVVDNCLLNLDDYEASASSCNDENINNNVNKEHLIDVDYSVPVDEEDKMFNYSFDNLPQIRVRADEQRIVQMEQQQDNNFGDVKVANVKQDDAFLVQSQVKSDQNQQEEQVNNSTYTSPQQKPDQNPQQPATYQHQFVYIHRPIGTGQVPISSYYPYYAPQSHQQLNQFPVYVMPIGVGSTQPYNMALQSNIADTNVVASVRPQIPQSVVPEMTPSVYKAPVASSNSGFIQIPSNQFQQQYMNLSQNIHHPPHPIYGYDYGRAIQEQVYSTQTQQQHSNANAPSQYQSMTPAVAGAAISDVPKQFPIDNIQQPNKNSQQV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05869 494 Gene3D - 50 135 - -
Trre8g05869 494 SUPERFAMILY CAD & PB1 domains 46 144 - -
Trre8g05869 494 CDD PB1_UP2 35 134 - -
Trre8g05869 494 MobiDBLite consensus disorder prediction 273 305 - -
Trre8g05869 494 Pfam PB1 domain 45 134 IPR000270 GO:0005515
Trre8g05869 494 PANTHER OS05G0427100 PROTEIN-RELATED 11 355 - -
Trre8g05869 494 SMART PB1_new 44 136 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05869 Trre-Chr8 59306336 59307820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05869 23 162 MAP Kinase Kinase Kinase AT5G57610 42.759 3.24e-22 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05869 - - tpra:123913553 825.854