Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05868 ATGGAGAAAACAAAAACAGAAGAATGGAGAAAACATCACAGAAACCAAATCAACCACAAACCCATTTTAGAAACAGATCCTAATAATAACACAAAACAAATCCGACCCATTATCCAATCCACTCGTTGCAAGGCCACAATTTCATCTCTTCTTCTATCCACATTCTCCAATGAAACCTCACAACAACAACCCACCAACAATAACAACAAAAAGATCAACTTTTCATCTGCTGCAGCTACCATCAGAGGTTTAGGATGCACTGCCGCTGCTTCTCACCAGGTCTCCGTTCCGGCTGTGATTCGTGCATCTGCAGATTGGCCTCATCAAGGGAACAAAACCAGAAAAAAGAACAAGAACAAGAGAAACAACAAGAATACTAGTAGTAATAATGATGGTTCTTCTTCTTCTTCTTCTTCTTCTGCTACTTGTGTTGATTTTCAAGATGTTTGGTGTGGTCCTGGAATTGGATTCTCAACAGATGCTGCTGCATCTGTTGATTGTGTTGTGTCTAAGAAGAATTCCTCTTCAACTTCAAGGGCTAAAATTGATCTCGACAAGATTACTCACAGAGGGTCTTCATCTTCGTTCCGAAGGCGCACTACTGTCCACCCAGAAAACTTCTCTTTTCCGGATAACGATCCTGACATTTTCACAGCATGCACTTTTGGAACTGCAACATACCCTCGCCATATCAGAGATATTTCTTCTGATGATTTTTCTGAGATAATGGCGCTTCAAGGAAGAATACTAATGGGAAGACGATTCAATTCAAACGACCTTTACAGAGATTGGAGACTAGATGTTGATAACATGTCCTATGAGCAATTGCTTGAGCTTGGTGAGAAAATTGGTTATGTCAATACCGGACTTGAAAAAGATGAGATCGAACCTTACATAAGGAAGACCAAGCTTCAGTTTTGTGAAGATGCATCAAAGCATCAAGTAGACAAAAAATGCAGCATCTGTCAGGAGGAGTATGAAGCAGATGATGAACTTGGGAGGCTTAACTGTGATCACATGTATCACTTTCAATGTATACAACAATGGGTTGCACACAAAAATTTCTGTCCAGTGTGTAAGCAGCAGGTTGCAGCTAGACACTGA 1104 0.4049 MEKTKTEEWRKHHRNQINHKPILETDPNNNTKQIRPIIQSTRCKATISSLLLSTFSNETSQQQPTNNNNKKINFSSAAATIRGLGCTAAASHQVSVPAVIRASADWPHQGNKTRKKNKNKRNNKNTSSNNDGSSSSSSSSATCVDFQDVWCGPGIGFSTDAAASVDCVVSKKNSSSTSRAKIDLDKITHRGSSSSFRRRTTVHPENFSFPDNDPDIFTACTFGTATYPRHIRDISSDDFSEIMALQGRILMGRRFNSNDLYRDWRLDVDNMSYEQLLELGEKIGYVNTGLEKDEIEPYIRKTKLQFCEDASKHQVDKKCSICQEEYEADDELGRLNCDHMYHFQCIQQWVAHKNFCPVCKQQVAARH 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05868 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 365 IPR013083 -
Trre8g05868 367 SUPERFAMILY RING/U-box 318 364 - -
Trre8g05868 367 FunFam E3 ubiquitin-protein ligase rnf12-A 286 365 - -
Trre8g05868 367 Pfam Ring finger domain 318 360 IPR001841 -
Trre8g05868 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 56 363 IPR045191 GO:0061630
Trre8g05868 367 SMART ring_2 319 359 IPR001841 -
Trre8g05868 367 MobiDBLite consensus disorder prediction 102 138 - -
Trre8g05868 367 MobiDBLite consensus disorder prediction 123 138 - -
Trre8g05868 367 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05868 Trre-Chr8 59299764 59303026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05868 14 274 C3H Transcription Factor Family AT1G73760 40.580 3.90e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05868 - - cam:101510167 442.58