Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05859 ATGGGGAAGAAGAAGAAGAGAGTTGCTTCAAAGGTTTGGTGTTATTACTGCGATCGAGAATTCGATGACGAGAAGATTTTGGTTCAACATCAGAAAGCCAAACACTTCAAGTGTCATGTTTGTCATAAGAAGCTTTCAACTGCTGGTGGCATGTCCATTCACGTTCTTCAGGTCCACAAGGAAAACGTCACCAAGGTGCCAAATGCAAAACCTGGAAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATGTCTTGGCTGCTCATTATGGAGATGAAGATGACGATGTTCCATCAAAGACAGCCAAGGTGGATATCCCATCAACCCCATTTGTAGGTGGAATGGCGCCACCTCCTATGGGTGCCGGATATCCTCCACGACCAAACTTGGGCCCAATTAGACCAGTATATAATCCTGCTCTACCAGGTCCTCCTAATGCATGGGGAGTGGTTCCACCTCGACCTCAGCCATGGTATCCCCAGCCTCCAGCTGTTTCGATTCCCCCTTCTGTTCCATATGCACAGCAACCATTATTTCCTGTGCAGAATGTGAGGCCTCCATTGCCATCAACTAATTCTCCTGCACCACACATTCAGATTACTCCGCCTGGACTGCCTACATCTACAGCTTCTGTCCCAGTTTCACAACCTTTATTTCCTGTTGTTGGAAATAACCACACGACAACTCAAAGTTCACCATTTTCTACTGCACCTCTGTCTTCAAGTGTTCCATCAATTACTCCCATGCTTTCTTCAAATGTCCCTATTGACGCACATTTGGGCATCAACTCTTCTGTGACAAGTAGTTATCAAGCATTTGGGCTTCCAGGTGGTATAGCAAGTAACTCACATTCTTATGCTTCTGGCCCAAATACTGGTGGTCCTTCAATTGGACCTCCCCCAGTAATTTCAAACAAAGCTCCTGCTTCTCAGCCTGCCACTAATGAAGTCTACTTAGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTAACAAAATATCAGGTGCACGATGAAAGTAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGACTGGCTGGTCGAATGGCGTTTTAG 1125 0.456 MGKKKKRVASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMSIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGDEDDDVPSKTAKVDIPSTPFVGGMAPPPMGAGYPPRPNLGPIRPVYNPALPGPPNAWGVVPPRPQPWYPQPPAVSIPPSVPYAQQPLFPVQNVRPPLPSTNSPAPHIQITPPGLPTSTASVPVSQPLFPVVGNNHTTTQSSPFSTAPLSSSVPSITPMLSSNVPIDAHLGINSSVTSSYQAFGLPGGIASNSHSYASGPNTGGPSIGPPPVISNKAPASQPATNEVYLVWDDEAMSMEERRMSLTKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05859 374 CDD SUF4-like 11 92 - -
Trre8g05859 374 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Trre8g05859 374 Gene3D Classic Zinc Finger 2 63 - -
Trre8g05859 374 MobiDBLite consensus disorder prediction 291 314 - -
Trre8g05859 374 SMART c2h2final6 12 35 IPR013087 -
Trre8g05859 374 SMART c2h2final6 36 59 IPR013087 -
Trre8g05859 374 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Trre8g05859 374 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Trre8g05859 374 PANTHER ZINC FINGER PROTEIN 207 1 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05859 Trre-Chr8 59250789 59255548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05859 1 354 C2H2 Transcription Factor Family AT1G30970 64.033 5.43e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g05859 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05859 - - tpra:123918401 679.478