Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05856 ATGCTAGGTTCATTACCTATACTTCCTCTACCAGCTCCTCCTGTTGATGGAAATCTCGGTCCTCTCCCCGAGGCTCAACTCACCCAGGAGGAAGTGAACGAGAGGATTGAGAATGAGAAATCCTCTATTGAAGAAGCGGCGCCAACAACAGTTGCTACACACACTAGAACTATTGGAATAATTCACCCTCCTCCAGACATTAGGACCATTGTTGATAAAACCTCTCAGTTCGTTGCTAAAAATGGTCTTGAATTTGAAAAGAGGATTATTGTTAGTAATGCAGGCAATGCTAAGTTTAATTTCCTCAATTCATCAGATCCCTATCATGCGTATTATCAGCACAGGTTGGCTGAGTTCCGTGCTCAGAATCAGTCTTCTACGCCTCAACCTGGGGATTCTGATCTACTGGGATCAGCTCCGCCTGCACCGTCGGGTACTGATAGTAACGATGTCGCAACTACTGAGAAGCCTGATGTTTCGGCCCAGTTTAGACCAGTGAGGAAAGTACTTGATCCCCCCGAAGTTGAGCAGTATACAGTTAGGCTTCCTGAAGGAATTACAGGCGAAGAGCTCGATATAATAAAGCTTACAGCACAGTTTGTGGCTCGAAATGGGAAATCCTTTTTGACTGGATTGACAAGTAGGGAAATTAATAATCCCCAGTTTCATTTCTTGAAACCAACGCACAGCATGTTTACTTTTTTTACTTCTCTTGCGGATGCATATTCAAAGGTTTTGATGCCTCCCAAGGGTTTGACTGAAAAGCTGAAGAAGAGTGTCCCTGACATGACTACCGTGCTTGAAAGGTGTGTGAATAGGCTGGAATGGGAGCGTTCTCAAGAGCAAGCTAGGCAAAAGGCTGAAGATGAGATAGAGCAAGAAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAGTCAATAGATTTTGCTGACGATGAGGATGAAGAATTGCCTCCTCCAATGACGCTTGAGGAGGTTATAAGGAGAAGCAAGATGACACCCATGGAAGAAGATACCGTTGAGCCCGGAAAGGAAGTAGAAATGGAAATGGATGAGGAAGAGGCCCAACTTGTTGAAGAGGGAATGAGAGCTGCTAGTTTGGAAGACAATGATGATGGGAGGAGGAATGAAGTCAGGGTTACCGAGGACCCTGAACCACCGATGAGGATTGTGAAGAACTGGAAAAGACCAGAGGAGAGGCTTCCTGCAGATAGAGATTCAACCAAGTTTGTGGTTTCTCCTATCACTGGCGAACTGATTCCTATTAGTGAAATGTCAGAACATATGCGAATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGAATGTTTGCCAAAATTCGAGAAACCACTCTGGCACAGGATGATGAAATCTCAAAAAACATTGTTGGACTTGCTCGGACCCGTCCCGATATTTTTGGTACTACAGAGGAAGAGGTTTCCAATGCTGTGAAGGCTGAAATTGAGAAAAATGATGAACAACCTAAGCAGGTTATATGGGATGGTCACAGTGGTAGTATTGGCCGTACTGCAAACCAAGCAATGTCACAGAATATTGGGAGTGAGGATCAAAATGATGCTTTTAATAATGAATCTAAAAACCTCCCCGGTCCTGCTGCACCTCCTCCAAGACCTGGCATGCCTTCAGTTCGTCCTCTTCCACCACCACCAGGACTGGCTTTGAATCTACCTCGTGGTCCTATGCATACCATGCAGTATTCTAATCCTAATAGCGGCGGCCTTCCAATGCCTCCACCAAGACCACCAGGCATGCACATGATGCAATCTCTCAGGCCAGCGCCCCCTCCTCCAATGCAAATGTCCGCTGGACAGCATTCCATGATGGGTGGTCAACCACCCCAAATGCATCCATCAATTCCTATGAATAATCAAGGAATGCCCATACCTCCACCGCCTGGATCTCAGTTCACTCCTGTTCCACGGCCTTATGTTCCGCTCTCTCATCCACCACCAGGGATGCCTATGATGCATCCACCGCCACCACCTCAAGGACTACCGCCGCCGCCGCCACCTGAGGAAGCTCTTCCCCCGCTACCAGAGGAACCAGAACCAAAGAGGCAGAAGCATGATGATTCTGCTCTGATCCCTGAGGATAAATTTCTGGCTCAACATCCGGGACCTGCTCGCATCAGTGTATCTGTGCCTAATGTTGATGAAGGAAATCTCAAGGGACAAGTTCTCGAAATAACTGTACAATCTCTATCTGAAACTGTTGGCAGCCTGAAGGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCGGGCTTTCTCAAGGATAATATGTCACTTGCACATTACAATATTAGTGGAGGAGAAACACTCTCGCTAACCTTGAGAGAGCGTGGTGGTAGAAAGAGATGA 2427 0.4619 MLGSLPILPLPAPPVDGNLGPLPEAQLTQEEVNERIENEKSSIEEAAPTTVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGLEFEKRIIVSNAGNAKFNFLNSSDPYHAYYQHRLAEFRAQNQSSTPQPGDSDLLGSAPPAPSGTDSNDVATTEKPDVSAQFRPVRKVLDPPEVEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVESIDFADDEDEELPPPMTLEEVIRRSKMTPMEEDTVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDDGRRNEVRVTEDPEPPMRIVKNWKRPEERLPADRDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISKNIVGLARTRPDIFGTTEEEVSNAVKAEIEKNDEQPKQVIWDGHSGSIGRTANQAMSQNIGSEDQNDAFNNESKNLPGPAAPPPRPGMPSVRPLPPPPGLALNLPRGPMHTMQYSNPNSGGLPMPPPRPPGMHMMQSLRPAPPPPMQMSAGQHSMMGGQPPQMHPSIPMNNQGMPIPPPPGSQFTPVPRPYVPLSHPPPGMPMMHPPPPPQGLPPPPPPEEALPPLPEEPEPKRQKHDDSALIPEDKFLAQHPGPARISVSVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNISGGETLSLTLRERGGRKR 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05856 808 MobiDBLite consensus disorder prediction 528 601 - -
Trre8g05856 808 MobiDBLite consensus disorder prediction 586 601 - -
Trre8g05856 808 MobiDBLite consensus disorder prediction 142 156 - -
Trre8g05856 808 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 47 758 IPR045146 GO:0003723|GO:0045292
Trre8g05856 808 MobiDBLite consensus disorder prediction 122 158 - -
Trre8g05856 808 Pfam Surp module 68 119 IPR000061 GO:0003723|GO:0006396
Trre8g05856 808 Pfam Surp module 191 242 IPR000061 GO:0003723|GO:0006396
Trre8g05856 808 SUPERFAMILY Surp module (SWAP domain) 46 120 IPR035967 GO:0003723|GO:0006396
Trre8g05856 808 SMART ubq_7 729 801 IPR000626 GO:0005515
Trre8g05856 808 FunFam Splicing factor 3a, subunit 1 186 244 - -
Trre8g05856 808 MobiDBLite consensus disorder prediction 659 722 - -
Trre8g05856 808 MobiDBLite consensus disorder prediction 543 569 - -
Trre8g05856 808 ProSiteProfiles SURP motif repeat profile. 193 235 IPR000061 GO:0003723|GO:0006396
Trre8g05856 808 Gene3D Surp module 54 127 IPR035967 GO:0003723|GO:0006396
Trre8g05856 808 SMART surpneu2 191 244 IPR000061 GO:0003723|GO:0006396
Trre8g05856 808 SMART surpneu2 68 121 IPR000061 GO:0003723|GO:0006396
Trre8g05856 808 Gene3D - 697 807 - -
Trre8g05856 808 CDD Ubl_SF3a120 721 801 IPR035563 -
Trre8g05856 808 ProSiteProfiles Ubiquitin domain profile. 749 805 IPR000626 GO:0005515
Trre8g05856 808 Coils Coil 277 297 - -
Trre8g05856 808 MobiDBLite consensus disorder prediction 692 711 - -
Trre8g05856 808 Gene3D Surp module 186 244 IPR035967 GO:0003723|GO:0006396
Trre8g05856 808 ProSiteProfiles SURP motif repeat profile. 70 112 IPR000061 GO:0003723|GO:0006396
Trre8g05856 808 Coils Coil 355 375 - -
Trre8g05856 808 Pfam Pre-mRNA splicing factor PRP21 like protein 262 474 IPR022030 -
Trre8g05856 808 Pfam Ubiquitin family 736 803 IPR000626 GO:0005515
Trre8g05856 808 FunFam Probable splicing factor 3A subunit 1 697 807 - -
Trre8g05856 808 SUPERFAMILY Ubiquitin-like 703 806 IPR029071 -
Trre8g05856 808 FunFam Splicing factor 3A subunit 1 54 125 - -
Trre8g05856 808 SUPERFAMILY Surp module (SWAP domain) 170 243 IPR035967 GO:0003723|GO:0006396
Trre8g05856 808 MobiDBLite consensus disorder prediction 659 691 - -
Trre8g05856 808 PRINTS Proline rich extensin signature 579 596 - -
Trre8g05856 808 PRINTS Proline rich extensin signature 643 668 - -
Trre8g05856 808 PRINTS Proline rich extensin signature 543 564 - -
Trre8g05856 808 PRINTS Proline rich extensin signature 675 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05856 Trre-Chr8 59238237 59240804 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05856 736 805 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.571 2.01e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05856 K12825 - gmx:100790309 1222.61