Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05852 ATGAAGAATCACCACCACCACCCTTTGGCTTCAAAGTTACAAGAGCAAAATGGGAGCAAAAGAGACACGTTCATTCAAGCACATAGAGCTTGGCTTCTGAAGTTATTTTTGCTATATATTCTTCTGATGGCTATAATTAGTTATTGCATCTACATCAAAATGGATGTGGATACTAAAGTTAGAAGGAAAGAGATTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGCTTCAAGACCAATTTAGTGTCAGTGTCAACCATGTTCATGCTCTTGCCATCCTTGTGTCAACTTTCCATTATTACAGAAACCCTTCTGCCATTGATCAGGAAACTTTTGGAGAATATACGGCTAGGACTGCATTCGAAAGGCCATTACTGAGTGGAGTGGCATATGCACAAAGAGTGGTTAACTCGGAAAGAGAACAATTTGAAAAGCAACATGGAGTGGTTATAAAGACAATGGTGGAAAGAGAGGTTTCACCGATTAGGGATGAGTATGCACCAGTCATATTTGCTCAAGAAACCCTCTCTTACCTTGAGTCTATTGATATGATGTCTGGCGAGGAGGACCGAGAGAACATTATGAGAGCTAGGGCTACCGGGAAAGCTGTTCTGACTAGCCCTTTTAGGTTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTCCCTCCAAACCCAACAACAGAAGAGCTCATTAAAGCGACCGCAGGATATATTGGAGGATCCTTTGATGTTGAGTCCCTAGTAGAGAATTTACTCGGTCAACTTGCTGGTCATCAAGCAATTTTGGTGTATGTATATGATATCACAAACTCTACTGATCCCTTGATCATGTACGGCAACCCATATGAAGAAGGTGATGTTTCTCTTGTCCATGAAAGTAAGCTTGATTTCGGAGATCCATACAGGAAACATAAAATGATATGTAGATATCACCAGAAGGCACCGACAAATTGGATAGCAGTTGGCACAGCATTCCTATTCTTTGTGATTCTTTTTTTGATAGGTTACATTTTATACGGTGCTGGGAATCATATTGTCAAAGTAGAGGATGACTTCCATGAAATGCAAGAACTGAAAGTTCGAGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTTGCTACTGTCTCTCATGAAATTAGAACACCAATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGAACCGAGTTGAATTCCACCCAACGGGACTACGCTCAGACAGCTCAAGCATGCGGGAAGGCTCTCATAGCATTAATAAATGAAGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCGGTTCCGTTTGATCTTCGATCAATACTCGATGATGTCCTCTCTCTTTTTTCGGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCGGTTTTTGTTTCTGATAAAGTTCCTGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATATATTTGTTAAAGTCCATTTAGCTGAAAATAGAAAGTCTGCAGTGAATGGAAAATTTGAGACTTTTCGAAATGGAAGACTTGAAGAAGTTATGCATATATCTGGTGGATATAATCTTAAAACCCTTAGTGGATTTGAAGCAGCTGATGAACGCAACAACTGGGATAATTTTAACCATCTAATTGCCGATGAAGAATTTTTCTGCGATGCTTCGACTAAAAAAGTGGCATCTAATGAATCTTATGAGCAAGTAACCTTGATGGTCTGTGTTGAAGACACTGGAATTGGAATTCCTTTCTCGGCTCAAGATAGGATTTTCATGCCTTTTGTCCAGGCAGATAGCTCTACTTCTAGAAACTATGGTGGTACCGGCATTGGCTTGAGTATCAGTAAGTGCCTGGTCGAATTAATGGGTGGTCAGATAAACTTTATAAGCCGACCGCAGATTGGAAGCACCTTTTCATTTACTGCGGATTTTGGAATATTTAAGAAGAATCCAATAACTGAGGTGAAGAAGCTTAAGTATGAAGATCTACCATCCAGTTTTAGAGGGCTTAAAGCCGTTGTGGTTGATGCTAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTTGGGATACAGGCGAAAGTCGCAAATGCCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTCGACCACAGGATCATTCCAGCCTGATATTATTTTTGTTGAGAAAGATTCATGGGTTTGTGGAGATGACGGGATCTTCAGTGTGTGGCAACTTGACTGGAAACAGAACGGACATATATTTAAGATGCCTCAAATGATCCTTCTTGCGACGAATATTAGTAACAATGAATTCGATAAAGCTAAATCCGCGGGTTTTAGCGATACAGTGATCATGAAGCCGCTTAGAGCGAGTATGGTGGGAGCTTGTCTTCAGCAAGTTTTAGGGACAGGCAAGAAGAGACAGTTAGGAAAAGAGATGCCTAACGGTTCGACTTCAGTTCGAAGCCTTCTTTATGGAAAGAAAATTTTAGTGGTTGATGACAATGTAGTGAACCGGAGAGTGGCTGCAGGTGCATTGAAAAATTTTGGAGCTGATGTGAAGTGTGCAGATAGTGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCACAATTTTGATGCTTGCTTCATGGATATCCAAATGCCAGAAATGGACGGGTTTGAAGCGACTCGTCGAATTCGCGAGATGGAGAGGGCGGCAAATGAGGAAACGAATGGTGAATGTGGTGAAGGGAAAATCGAGTTCCATTTACCTATATTAGCCATGACAGCAGATGTAATACATGCAACATATGAAGAGTGTTTGAAATGTGGAATGGATGGTTATGTCTCAAAACCTTTCGAGGAAGAAAATCTTTATCAAGCAGTTGCAAAGTTTTTCGAGACCAAGCCTATTACTACCACAATAGTAAACTCATGA 3003 0.4083 MKNHHHHPLASKLQEQNGSKRDTFIQAHRAWLLKLFLLYILLMAIISYCIYIKMDVDTKVRRKEILGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFGEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMVEREVSPIRDEYAPVIFAQETLSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGYIGGSFDVESLVENLLGQLAGHQAILVYVYDITNSTDPLIMYGNPYEEGDVSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIAVGTAFLFFVILFLIGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRKSAVNGKFETFRNGRLEEVMHISGGYNLKTLSGFEAADERNNWDNFNHLIADEEFFCDASTKKVASNESYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTADFGIFKKNPITEVKKLKYEDLPSSFRGLKAVVVDAKPVRAAVTRYHLKRLGIQAKVANAINKAVSLCGKNGSSTTGSFQPDIIFVEKDSWVCGDDGIFSVWQLDWKQNGHIFKMPQMILLATNISNNEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKEMPNGSTSVRSLLYGKKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHNFDACFMDIQMPEMDGFEATRRIREMERAANEETNGECGEGKIEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFETKPITTTIVNS 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05852 1000 Gene3D - 54 106 - -
Trre8g05852 1000 CDD HisKA 377 438 IPR003661 GO:0000155|GO:0007165
Trre8g05852 1000 Gene3D - 351 440 - -
Trre8g05852 1000 SMART HisKA_10 377 442 IPR003661 GO:0000155|GO:0007165
Trre8g05852 1000 Pfam His Kinase A (phospho-acceptor) domain 377 442 IPR003661 GO:0000155|GO:0007165
Trre8g05852 1000 SUPERFAMILY CheY-like 695 830 IPR011006 -
Trre8g05852 1000 Gene3D - 693 833 - -
Trre8g05852 1000 Gene3D - 850 996 - -
Trre8g05852 1000 FunFam Histidine kinase 4 107 323 - -
Trre8g05852 1000 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 489 672 IPR003594 -
Trre8g05852 1000 SMART HKATPase_4 489 674 IPR003594 -
Trre8g05852 1000 Pfam CHASE domain 106 287 IPR006189 -
Trre8g05852 1000 CDD HATPase_EvgS-ArcB-TorS-like 494 672 - -
Trre8g05852 1000 ProSiteProfiles Response regulatory domain profile. 856 988 IPR001789 GO:0000160
Trre8g05852 1000 CDD REC_hyHK_CKI1_RcsC-like 857 984 - -
Trre8g05852 1000 PANTHER TWO-COMPONENT HISTIDINE KINASE 6 985 - -
Trre8g05852 1000 Gene3D CHASE domain 107 323 IPR042240 -
Trre8g05852 1000 ProSiteProfiles Response regulatory domain profile. 699 829 IPR001789 GO:0000160
Trre8g05852 1000 Coils Coil 427 447 - -
Trre8g05852 1000 Pfam Response regulator receiver domain 857 984 IPR001789 GO:0000160
Trre8g05852 1000 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 431 669 IPR036890 -
Trre8g05852 1000 ProSiteProfiles Histidine kinase domain profile. 384 674 IPR005467 -
Trre8g05852 1000 SMART REC_2 855 984 IPR001789 GO:0000160
Trre8g05852 1000 SUPERFAMILY CheY-like 854 989 IPR011006 -
Trre8g05852 1000 Gene3D - 441 677 IPR036890 -
Trre8g05852 1000 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 363 443 IPR036097 GO:0000155|GO:0007165
Trre8g05852 1000 ProSiteProfiles CHASE domain profile. 103 316 IPR006189 -
Trre8g05852 1000 FunFam Histidine kinase 4 349 440 - -
Trre8g05852 1000 PRINTS Bacterial sensor protein C-terminal signature 634 652 IPR004358 GO:0016310|GO:0016772
Trre8g05852 1000 PRINTS Bacterial sensor protein C-terminal signature 599 613 IPR004358 GO:0016310|GO:0016772
Trre8g05852 1000 PRINTS Bacterial sensor protein C-terminal signature 658 671 IPR004358 GO:0016310|GO:0016772
Trre8g05852 1000 PRINTS Bacterial sensor protein C-terminal signature 617 627 IPR004358 GO:0016310|GO:0016772
Trre8g05852 1000 SMART CHASE_2 103 289 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05852 Trre-Chr8 59202453 59207303 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05852 20 996 Histidine Kinase Gene Family AT2G01830 70.427 0.0 1387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre8g05852 HATPase_c 1.1e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05852 K14489 - gmx:100818481 1674.06