Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05851 ATGGGTCTTCTCTTGAAGATGAAGAATCACCACCACCACCCTTTGGCTTCAAAGTTACAAGAGCAAAATGGGAGCAAAAGAGACACGTTCATTCAAGCACATAGAGCTTGGCTTCTGAAGTTATTTTTGCTATATATTCTTCTGATGGCTATAATTAGTTATTGCATCTACATCAAAATGGATGTGGATACTAAAGTTAGAAGGAAAGAGATTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGCTTCAAGACCAATTTAGTGTCAGTGTCAACCATGTTCATGCTCTTGCCATCCTTGTGTCAACTTTCCATTATTACAGAAACCCTTCTGCCATTGATCAGGAAACTTTTGGAGAATATACGGCTAGGACTGCATTCGAAAGGCCATTACTGAGTGGAGTGGCATATGCACAAAGAGTGGTTAACTCGGAAAGAGAACAATTTGAAAAGCAACATGGAGTGGTTATAAAGACAATGGTGGAAAGAGAGGTTTCACCGATTAGGGATGAGTATGCACCAGTCATATTTGCTCAAGAAACCCTCTCTTACCTTGAGTCTATTGATATGATGTCTGGCGAGGAGGACCGAGAGAACATTATGAGAGCTAGGGCTACCGGGAAAGCTGTTCTGACTAGCCCTTTTAGGTTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTCCCTCCAAACCCAACAACAGAAGAGCTCATTAAAGCGACCGCAGGATATATTGGAGGATCCTTTGATGTTGAGTCCCTAGTAGAGAATTTACTCGGTCAACTTGCTGGTCATCAAGCAATTTTGGTGTATGTATATGATATCACAAACTCTACTGATCCCTTGATCATGTACGGCAACCCATATGAAGAAGGTGATGTTTCTCTTGTCCATGAAAGTAAGCTTGATTTCGGAGATCCATACAGGAAACATAAAATGATATGTAGATATCACCAGAAGGCACCGACAAATTGGATAGCAGTTGGCACAGCATTCCTATTCTTTGTGATTCTTTTTTTGATAGGTTACATTTTATACGGTGCTGGGAATCATATTGTCAAAGTAGAGGATGACTTCCATGAAATGCAAGAACTGAAAGTTCGAGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTTGCTACTGTCTCTCATGAAATTAGAACACCAATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGAACCGAGTTGAATTCCACCCAACGGGACTACGCTCAGACAGCTCAAGCATGCGGGAAGGCTCTCATAGCATTAATAAATGAAGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCGGTTCCGTTTGATCTTCGATCAATACTCGATGATGTCCTCTCTCTTTTTTCGGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCGGTTTTTGTTTCTGATAAAGTTCCTGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATATATTTGTTAAAGTCCATTTAGCTGAAAATAGAAAGTCTGCAGTGAATGGAAAATTTGAGACTTTTCGAAATGGAAGACTTGAAGAAGTTATGCATATATCTGGTGGATATAATCTTAAAACCCTTAGTGGATTTGAAGCAGCTGATGAACGCAACAACTGGGATAATTTTAACCATCTAATTGCCGATGAAGAATTTTTCTGCGATGCTTCGACTAAAAAAGTGGCATCTAATGAATCTTATGAGCAAGTAACCTTGATGGTCTGTGTTGAAGACACTGGAATTGGAATTCCTTTCTCGGCTCAAGATAGGATTTTCATGCCTTTTGTCCAGGCAGATAGCTCTACTTCTAGAAACTATGGTGGTACCGGCATTGGCTTGAGTATCAGTAAGTGCCTGGTCGAATTAATGGGTGGTCAGATAAACTTTATAAGCCGACCGCAGATTGGAAGCACCTTTTCATTTACTGCGGATTTTGGAATATTTAAGAAGAATCCAATAACTGAGGTGAAGAAGCTTAAGTATGAAGATCTACCATCCAGTTTTAGAGGGCTTAAAGCCGTTGTGGTTGATGCTAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTTGGGATACAGGCGAAAGTCGCAAATGCCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTCGACCACAGGATCATTCCAGCCTGATATTATTTTTGTTGAGAAAGATTCATGGGTTTGTGGAGATGACGGGATCTTCAGTGTGTGGCAACTTGACTGGAAACAGAACGGACATATATTTAAGATGCCTCAAATGATCCTTCTTGCGACGAATATTAGTAACAATGAATTCGATAAAGCTAAATCCGCGGGTTTTAGCGATACAGTGATCATGAAGCCGCTTAGAGCGAGTATGGTGGGAGCTTGTCTTCAGCAAGTTTTAGGGACAGGCAAGAAGAGACAGTTAGGAAAAGAGATGCCTAACGGTTCGACTTCAGTTCGAAGCCTTCTTTATGGAAAGAAAATTTTAGTGGTTGATGACAATGTAGTGAACCGGAGAGTGGCTGCAGGTGCATTGAAAAATTTTGGAGCTGATGTGAAGTGTGCAGATAGTGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCACAATTTTGATGCTTGCTTCATGGATATCCAAATGCCAGAAATGGACGGGTTTGAAGCGACTCGTCGAATTCGCGAGATGGAGAGGGCGGCAAATGAGGAAACGAATGGTGAATGTGGTGAAGGGAAAATCGAGTTCCATTTACCTATATTAGCCATGACAGCAGATGTAATACATGCAACATATGAAGAGTGTTTGAAATGTGGAATGGATGGTTATGTCTCAAAACCTTTCGAGGAAGAAAATCTTTATCAAGCAGTTGCAAAGTTTTTCGAGACCAAGCCTATTACTACCACAATAGTAAACTCATGA 3021 0.4085 MGLLLKMKNHHHHPLASKLQEQNGSKRDTFIQAHRAWLLKLFLLYILLMAIISYCIYIKMDVDTKVRRKEILGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFGEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMVEREVSPIRDEYAPVIFAQETLSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGYIGGSFDVESLVENLLGQLAGHQAILVYVYDITNSTDPLIMYGNPYEEGDVSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIAVGTAFLFFVILFLIGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRKSAVNGKFETFRNGRLEEVMHISGGYNLKTLSGFEAADERNNWDNFNHLIADEEFFCDASTKKVASNESYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTADFGIFKKNPITEVKKLKYEDLPSSFRGLKAVVVDAKPVRAAVTRYHLKRLGIQAKVANAINKAVSLCGKNGSSTTGSFQPDIIFVEKDSWVCGDDGIFSVWQLDWKQNGHIFKMPQMILLATNISNNEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKEMPNGSTSVRSLLYGKKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHNFDACFMDIQMPEMDGFEATRRIREMERAANEETNGECGEGKIEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFETKPITTTIVNS 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05851 1006 Gene3D CHASE domain 113 329 IPR042240 -
Trre8g05851 1006 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 678 IPR003594 -
Trre8g05851 1006 SUPERFAMILY CheY-like 701 836 IPR011006 -
Trre8g05851 1006 SMART CHASE_2 109 295 IPR006189 -
Trre8g05851 1006 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 675 IPR036890 -
Trre8g05851 1006 CDD REC_hyHK_CKI1_RcsC-like 863 990 - -
Trre8g05851 1006 Pfam His Kinase A (phospho-acceptor) domain 383 448 IPR003661 GO:0000155|GO:0007165
Trre8g05851 1006 Gene3D - 60 112 - -
Trre8g05851 1006 ProSiteProfiles Histidine kinase domain profile. 390 680 IPR005467 -
Trre8g05851 1006 ProSiteProfiles CHASE domain profile. 109 322 IPR006189 -
Trre8g05851 1006 Pfam Response regulator receiver domain 863 990 IPR001789 GO:0000160
Trre8g05851 1006 PANTHER TWO-COMPONENT HISTIDINE KINASE 11 991 - -
Trre8g05851 1006 SMART REC_2 861 990 IPR001789 GO:0000160
Trre8g05851 1006 ProSiteProfiles Response regulatory domain profile. 705 835 IPR001789 GO:0000160
Trre8g05851 1006 SMART HKATPase_4 495 680 IPR003594 -
Trre8g05851 1006 CDD HATPase_EvgS-ArcB-TorS-like 500 678 - -
Trre8g05851 1006 Gene3D - 357 446 - -
Trre8g05851 1006 Coils Coil 433 453 - -
Trre8g05851 1006 Pfam CHASE domain 112 293 IPR006189 -
Trre8g05851 1006 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 449 IPR036097 GO:0000155|GO:0007165
Trre8g05851 1006 SUPERFAMILY CheY-like 860 995 IPR011006 -
Trre8g05851 1006 CDD HisKA 383 444 IPR003661 GO:0000155|GO:0007165
Trre8g05851 1006 Gene3D - 856 1002 - -
Trre8g05851 1006 Gene3D - 699 839 - -
Trre8g05851 1006 ProSiteProfiles Response regulatory domain profile. 862 994 IPR001789 GO:0000160
Trre8g05851 1006 Gene3D - 447 683 IPR036890 -
Trre8g05851 1006 SMART HisKA_10 383 448 IPR003661 GO:0000155|GO:0007165
Trre8g05851 1006 FunFam Histidine kinase 4 113 329 - -
Trre8g05851 1006 PRINTS Bacterial sensor protein C-terminal signature 640 658 IPR004358 GO:0016310|GO:0016772
Trre8g05851 1006 PRINTS Bacterial sensor protein C-terminal signature 664 677 IPR004358 GO:0016310|GO:0016772
Trre8g05851 1006 PRINTS Bacterial sensor protein C-terminal signature 623 633 IPR004358 GO:0016310|GO:0016772
Trre8g05851 1006 PRINTS Bacterial sensor protein C-terminal signature 605 619 IPR004358 GO:0016310|GO:0016772
Trre8g05851 1006 FunFam Histidine kinase 4 355 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05851 Trre-Chr8 59202453 59207321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05851 26 1002 Histidine Kinase Gene Family AT2G01830 70.427 0.0 1386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre8g05851 HATPase_c 1.1e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05851 K14489 - gmx:100818481 1681.77