Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05848 ATGGTAAAAGTTGAATTGAGCTTTGGAAGGTCATTCAATTTTGTTTTGGTTTTGGTGTTTTCTGTTTTGGTTATACCAGCAAGGTGTCAAGATGCGGTGGTAATGAATATTTTGAAAAACACGATAAATGGTCCAATTACACTCCAATGGACAAATCCTGATGTATGTGAATGGGAGCATATTATGTGTGATTCAAGAAAACGTGTAACTGATATTCAAATAGGAAGACAAAATCTTCAAGGCTCACTTCCAAAGGAACTTGTGAAGCTCACAGCGTTGCAACGTTTTGAGTGCCAAAGCAATGGCCTCACAGGTTCATTCCCTTACCTCTCAAAATCGTTACAGACGCTTATAATCCACGACAACAAATTCACCTCGATTCCTGGCGATTTCTTCACGGGAATGGACAGTTTGCAAGAAGTAGATATCAACGACAACCCCTTATCTAGATGGGAAATTCCCAATTCTCTAAGAGATTGTGTTGCACTCCACACATTCAGTGCTCATAATGCTGGCATTTATGGGACTATTCCTGATTTTTTTGGCAGAGATGGTCCCTTCCCTGGATTGGTGTATTTGGAATTATCTAGTAATAATTTAGAAGGTGTTTTGCCTGCGAGTCTTTCTGGCAGTTCAATAGAGTCTCTTTTGGTTAATGGACAAAATAGTGTTAATAAACTCAGTGGTACCCTGGATGTGTTACAAAACATGACATCTTTGAAAAAGGTATGGGTTAATGGCAATTCATTTACAGGGCCTATACCTGATGTGTCACACCTTAATCAATTATCTGATTTGAATTTAAGAGACAATCAGCTAACTGGTGTTGTTCCACCTTCTTTAATTAGTCTCCCAAGCTTGCAAATAGTGAATTTAACGAATAATTATCTTCAAGGTTCACCTCCCAAGTTTAGATTTGGTGTTGGAGTTGATAATAATATGGTCGGGAGTAGAAATCAGTTTTGCACAAAAGTTCCAGGAGAACCATGTAGTCCTCTTGTGAATGCTTTGCTATTAGTTATTGAACCTTTGGGTTATCCTCTCCAATTTGCTGAAAGTTGGCAGGGTAATGATCCTTGTGCCAATAAATGGACAGGTATAATTTGTGTTGGTGGAAATATTTCAGTTATCAACTTTCAAAACATGGGAATAACTGGTCATATTTCTCCAAATTTTGCTAGTTTTTCATCTTTAACAAAACTGCTTCTTGCAAACAATAGTCTCACGGGTACCATACCAAACCAACTTACTAGTATGCCTCTTCTACAAGAGCTTGATGTTTCTAATAATCATTTGTATGGCCGCGTGCCATCATTTTCTAAAGGCGTTGTTCTTAAATTAGGTGGGAATCCTGATATTGGAAAGGATAAACCCGGTACTAGTAATAGCTTTTGGTTTAGAGGTAGTAACAAAAATAATATTGTCGGTGTCGTTGTTGGAATTATTTTGGGAATTGTCATTTTATTTGGTATTGGGACACTATTAATTATTAAGTTTGGAAAAAGGTTAGGGATTCATATGAGGATAGGTAAATATCCTGATGTTATAAAGGTACATCGTAAACACCAATGGGATGGAAATGATGTGAAGATAAGTGTTGTTAGTGGTGGTGAAGTAAGTGATGTATTAAGTCCCACTAGTAATGTTTATGAAGCTAGTAACATGGTGATTTCAATTCAAGTTTTGAGACAGGTTACATATAATTTTTGTGAGGAAAAAATAGTCGGGAAGGGTGGTTTTGGCACAGTTTACAAAGGGGAGTTGCACGATGGGACACAAATTGCAGTGAAAAGGATGCAATCAGGAATGACGGATGAGAAAGGACCAAATGAATTCACGTCGGAGATTGCAGTACTTACAAAGGTTCGACATAAACATTTGGTTTCACTCTTGGGGTATTGCTTAGATGGAGATGAAAAACTTCTGGTTTATGAGTATATGCCTCAAGGTCCTCTGAGTAAACATTTGTTCTATTGGAAAGAGGAAGGGATAAAGCCACTAAAATGGAAGACGAGGCTTAGTATTGCCTTGGATGTCGCTAGGGGTGTGGAATATCTTCACGAGTTTACCCAACAAATTTTTATCCATAGGGATCTCAAACCATCCAACATTTTGCTCGGAGATGATATGCGGGCCAAAGTATCTGACTTTGGATTGGTGCGACTTGCTCCTCAAGGAAAAATTTCCTTTCAAACTAGACTTGCCGGAACTTTTGGATATATGGCACCAGAGTATGCAGTCACAGGAAGACTAACAACAAAGGCTGATGTGTATAGTTTTGGTGTGATTCTCATGGAGATCATAACAGGAAGGAAAGCACTCGATGATAGCCAACCGGAAGAAAATGTCCACCTTGTTACATGGTTCCGTAGGATGTTATTGAACAAAGGTTCATTTCAAACAATCATTGATCAGACAGTTGAGGTTGATGAAGAATCCTATGCAAGCATTAATACGGTTGCCGAGTTGGCAGGACATTGTAGTGCAAGAGAGCCTCATCAACGCCCCGACATGAGTCATGTAGTGAATGTATTATCATCTCTTGTTGAAGTGTGGAAGCCTGTAGAACAAAATGTTGATGACATATATGGAATCAACTTTGACATGACACTACCGGAAGCTCTCCAAAGGTGGCAAGCTTTCGAAGGAAGAAGCACTCTTGATTTAACTATTTCTCCTTCACCAATGCATACCAGTGGAGACAACACACATACCTCTCAATCGCCAAATGTGTCTTCAGATTCATTGATTGGCCATTTTGATTTGGATCCAAACCGTGTTTTTGATATTGTACTTGAGTGTTTTGAACTTCAGCCCAATAATGATGTGTTTATAGAGCTGATTCCTATTTTTCCCAAGTCTCATGCTTCACAGATTCTTGGATTTAAATTTCAATATTATCAGCGCATGGAAGTCAGTAATCCTGTACCATATGGGCTCTATAGACTTGCAGCCTTGCTGGTGAAGCAAGATTTTACTGATCTTGATTGCATATATGCTCATTTACTCCCCAAGGATGAAGAAGCATTTGAGCATTATAGCACTTTCTCTTCCAAGCGCTTTGATGAGGTCTCAAAAGAGCACAGCACATCAACAATGGTAATTAGACGGACGCGAGTCCAAGCGAATAAGTCCCACAAGTCGCCGTCGTCATCGTCTCGCAATATTCACAAAACCACTTCTCTCAAAGGTAGGAGAAGAATAATCACAATTGCAAAAACAGAGTGCAATGGAGCGACGAGAATTCAGAAAAATACTAATAAAACGAAGATACTACGCCAACAACAAAAAGGGGCTGCTGCTCCTCTTTTGCAACAACAGACACCTCCTCCTCCTCCTTGTGTAATTCTTCTCTTTCCTCTCTGTGCTTCTGTGGATTTGGACCCACTTGCAGATGATCTCTGCTCATTGTTTTCCTCTACACTGCTCCCTGGACCTGCAACACCAACCATTCATTCTTCTCAATATGGGATTACAATATCCCTACTAAAAGCACCTCATGGTGATCTACTCTCCTGCATGGAAATGCTCAAGGTTGCTGATCTACTGGTTTTTGTCGCCTCAGCAAGGTCTTCTTTATGTCAACAAACTCATTCTCACTACATTGATTCATTTGGAGCTCAATGCCTTTCTGTATTTAGGTCTCTTGGTTTACCAACCACTCTTCTCTTTCTTCGTGATCTTCCCACTGATCTTAGACAGAGAAATGAACTCAAGAAGATTTGCTCATCAAGTCTTGCCTCTGAATTTCCTGAGGATTGTAAGTGTTATCCAGCTGATACAAAGGATGATCTGCACAAGTTCTTGCGCCTCTTTAAAGAGCAAAGGCTTAAAGTTCCTCATTGGAGAACTCATCGTTCTTACCTCATGGCTCATAAGGTTGATGTTGTCTGTGATGGCATTGTTTCTGACAAATGCACACTTCTTCTCACTGGTTATCTTCGTGGTCGTAACCTCTCTGTAAATCAACAGGTTCATGTTTCAGGTGCAGGAGATTTCCGACTGTGTAAAATAGAAGTTCTTGAGAATCCCTTTCTTTTTAATTCAACAAAAAATCAGGACCTTATGGATTCAGCTGAGACACATGACGTCGAGGTCATCCGTTCCCTGGTTCCAGATCCTCAAAACCAAGCTGTAGTTGGCGAGAATGATGAAGAGCAGGTCGTCCATTCCCTGGTTCTGGATCCTCAAAACCAAGCTGTAGTTGGCGAGAATGATGAAGAGCAGGCTGCATGGTATGATTTCAATGAAGAGAAGCCAGATGGTGATTCTAAGAAAGAAACTGACAATGTTTCAATGATGGAAATAGATAACATGACTATAAAGAACCTACAAGATGAACTAAAGGCAATTAAAGAAGATAATGCTGCAGATGAGGCTTTAGAAATGGAACAAGAAAACAGAGAGGACTGTGTTCCAATTGGCTCATATACTAGGCTGCATATCATGGACGTACCCAATGTTGTTGCTTCAAAGTTATGTATGCTTGCAAAGACAAACCCACTTACAGCAAGTGGCCTACTGGAACACGAATGTGAAGTATCTGTCCTTCATTTCAGTGTGAAGAAGCATGAAACATATCATGCACCCATCAAATCCAAGGAAGAGTTAATATTTCATGTTGGGTTTCGGCAATTTGTTGGCAGGCCAATTTTCTCTAGTGAGTCCATAAACACAGACAAGAGCAAGATGGAGAGGTTTCTCCATGCTGGACGCTTTTCAGTTGCTTCAGTTTGTGCAAAAACTTCATTCCCACCCCTTCCTACTATAATCCTCAAGAGAGCTGGAGTGGATGCCACACCAGCAGTAGCTGCTTTTGGCTCGCTGAAAACCGTTGATTGTGATAGGATAATCCTTAAGCGCGTTATTTTGACCGGCTATCCCCAACGAGTGTCAAAACATAAAGCTTTTGTGAAACACATGTTTTACAATCCTGATGATGTTAAATTTTTTAAGCCTGTAGAGCTTTATACCAAACACGGTCTTCGTGGCCGGATTAAAGAACCAGTTGGTACACATGGAGCAATGAAGTGCCTTCTCAATGGAGTTCTTGAACAGCGTGATACTGTATGCATGAATTTATACAAACGTGTGTACCCCAAGTTCAGTATGGAGGATCAAGATGCAGTTTAG 5133 0.4009 MVKVELSFGRSFNFVLVLVFSVLVIPARCQDAVVMNILKNTINGPITLQWTNPDVCEWEHIMCDSRKRVTDIQIGRQNLQGSLPKELVKLTALQRFECQSNGLTGSFPYLSKSLQTLIIHDNKFTSIPGDFFTGMDSLQEVDINDNPLSRWEIPNSLRDCVALHTFSAHNAGIYGTIPDFFGRDGPFPGLVYLELSSNNLEGVLPASLSGSSIESLLVNGQNSVNKLSGTLDVLQNMTSLKKVWVNGNSFTGPIPDVSHLNQLSDLNLRDNQLTGVVPPSLISLPSLQIVNLTNNYLQGSPPKFRFGVGVDNNMVGSRNQFCTKVPGEPCSPLVNALLLVIEPLGYPLQFAESWQGNDPCANKWTGIICVGGNISVINFQNMGITGHISPNFASFSSLTKLLLANNSLTGTIPNQLTSMPLLQELDVSNNHLYGRVPSFSKGVVLKLGGNPDIGKDKPGTSNSFWFRGSNKNNIVGVVVGIILGIVILFGIGTLLIIKFGKRLGIHMRIGKYPDVIKVHRKHQWDGNDVKISVVSGGEVSDVLSPTSNVYEASNMVISIQVLRQVTYNFCEEKIVGKGGFGTVYKGELHDGTQIAVKRMQSGMTDEKGPNEFTSEIAVLTKVRHKHLVSLLGYCLDGDEKLLVYEYMPQGPLSKHLFYWKEEGIKPLKWKTRLSIALDVARGVEYLHEFTQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPQGKISFQTRLAGTFGYMAPEYAVTGRLTTKADVYSFGVILMEIITGRKALDDSQPEENVHLVTWFRRMLLNKGSFQTIIDQTVEVDEESYASINTVAELAGHCSAREPHQRPDMSHVVNVLSSLVEVWKPVEQNVDDIYGINFDMTLPEALQRWQAFEGRSTLDLTISPSPMHTSGDNTHTSQSPNVSSDSLIGHFDLDPNRVFDIVLECFELQPNNDVFIELIPIFPKSHASQILGFKFQYYQRMEVSNPVPYGLYRLAALLVKQDFTDLDCIYAHLLPKDEEAFEHYSTFSSKRFDEVSKEHSTSTMVIRRTRVQANKSHKSPSSSSRNIHKTTSLKGRRRIITIAKTECNGATRIQKNTNKTKILRQQQKGAAAPLLQQQTPPPPPCVILLFPLCASVDLDPLADDLCSLFSSTLLPGPATPTIHSSQYGITISLLKAPHGDLLSCMEMLKVADLLVFVASARSSLCQQTHSHYIDSFGAQCLSVFRSLGLPTTLLFLRDLPTDLRQRNELKKICSSSLASEFPEDCKCYPADTKDDLHKFLRLFKEQRLKVPHWRTHRSYLMAHKVDVVCDGIVSDKCTLLLTGYLRGRNLSVNQQVHVSGAGDFRLCKIEVLENPFLFNSTKNQDLMDSAETHDVEVIRSLVPDPQNQAVVGENDEEQVVHSLVLDPQNQAVVGENDEEQAAWYDFNEEKPDGDSKKETDNVSMMEIDNMTIKNLQDELKAIKEDNAADEALEMEQENREDCVPIGSYTRLHIMDVPNVVASKLCMLAKTNPLTASGLLEHECEVSVLHFSVKKHETYHAPIKSKEELIFHVGFRQFVGRPIFSSESINTDKSKMERFLHAGRFSVASVCAKTSFPPLPTIILKRAGVDATPAVAAFGSLKTVDCDRIILKRVILTGYPQRVSKHKAFVKHMFYNPDDVKFFKPVELYTKHGLRGRIKEPVGTHGAMKCLLNGVLEQRDTVCMNLYKRVYPKFSMEDQDAV 1710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05848 1710 PANTHER OSJNBA0070M12.3 PROTEIN 15 908 - -
Trre8g05848 1710 SMART serkin_6 569 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05848 1710 Gene3D Phosphorylase Kinase; domain 1 537 646 - -
Trre8g05848 1710 SUPERFAMILY L domain-like 29 304 - -
Trre8g05848 1710 MobiDBLite consensus disorder prediction 1040 1058 - -
Trre8g05848 1710 Pfam Protein tyrosine and serine/threonine kinase 572 845 IPR001245 GO:0004672|GO:0006468
Trre8g05848 1710 FunFam receptor protein kinase TMK1 647 864 - -
Trre8g05848 1710 SMART LRR_typ_2 135 159 IPR003591 -
Trre8g05848 1710 SMART LRR_typ_2 187 210 IPR003591 -
Trre8g05848 1710 SMART LRR_typ_2 260 283 IPR003591 -
Trre8g05848 1710 SMART LRR_typ_2 395 419 IPR003591 -
Trre8g05848 1710 SMART LRR_typ_2 112 134 IPR003591 -
Trre8g05848 1710 SMART LRR_typ_2 284 306 IPR003591 -
Trre8g05848 1710 SUPERFAMILY Protein kinase-like (PK-like) 550 855 IPR011009 -
Trre8g05848 1710 FunFam receptor protein kinase TMK1 535 646 - -
Trre8g05848 1710 Pfam THO complex subunit 2 N-terminus 915 1026 IPR032302 -
Trre8g05848 1710 SUPERFAMILY L domain-like 336 440 - -
Trre8g05848 1710 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 1441 1700 IPR007034 -
Trre8g05848 1710 SMART aarp2cn2 1264 1345 IPR012948 GO:0005634|GO:0042254
Trre8g05848 1710 MobiDBLite consensus disorder prediction 891 912 - -
Trre8g05848 1710 MobiDBLite consensus disorder prediction 1040 1059 - -
Trre8g05848 1710 FunFam Receptor-like kinase TMK4 29 327 - -
Trre8g05848 1710 Gene3D Transferase(Phosphotransferase) domain 1 647 866 - -
Trre8g05848 1710 ProSiteProfiles Protein kinase domain profile. 569 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05848 1710 Pfam Leucine rich repeat N-terminal domain 336 369 IPR013210 -
Trre8g05848 1710 Pfam Leucine rich repeat N-terminal domain 38 64 IPR013210 -
Trre8g05848 1710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Trre8g05848 1710 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Trre8g05848 1710 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
Trre8g05848 1710 Gene3D Ribonuclease Inhibitor 30 327 IPR032675 -
Trre8g05848 1710 SMART DUF663_2 1404 1698 IPR007034 -
Trre8g05848 1710 CDD STKc_IRAK 575 848 - -
Trre8g05848 1710 Pfam AARP2CN (NUC121) domain 1265 1344 IPR012948 GO:0005634|GO:0042254
Trre8g05848 1710 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 1112 1278 IPR030387 -
Trre8g05848 1710 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
Trre8g05848 1710 Coils Coil 1434 1461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05848 Trre-Chr8 59171144 59185601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05848 72 851 Receptor kinase-like Gene Family AT5G07280 30.923 4.60e-81 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre8g05848 RIBIOP_C 5.3e-84 CL0575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05848 K00924 - gmx:100788903 1276.92