Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05844 ATGGAACAAGTTCAGTGTTTCGGCCGTAAGAAGAACGCCGTTGCAGTGACACACTGCAAGAGAGGTCGTGGTCTCATCAAGATCAATGGTGTTCCAATCGAACTCATCGAGCCTGAGATTCTCCGATTCAAGGCATACGAGCCAATCCTCCTTCTCGGAAGACACCGTTTCGCCGGAGTCGACATGAGGATCAGAGTGAAGGGAGGAGGTAAAACTTCTCAGATCTATGCCATCAGACAGAGTATCGCCAAGGCTTTGGTTGCTTACTACCAGAAATACGTTGATGAACAGAGTAAGAAGGAGATTAAGGATATTCTTGTTCGTTACGATCGTTCCAGAAATCTTACCGTTAGATTGTTTTGGCGTTTTGGGATGTTGATCACCAAACATTGTTGGCCTCTATATCTCACTTTCTTTCATATGCATGTGGCTGCTAACTTATATATCTCACCTTTTTCAATGGAAAAAAGGACTATAATGGTTGTTCAACGATGCTACTTCCTACAAGTTAATCGGTGTCTTATTCATGATAATGCGGATTGA 543 0.4309 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGVPIELIEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGKTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRSRNLTVRLFWRFGMLITKHCWPLYLTFFHMHVAANLYISPFSMEKRTIMVVQRCYFLQVNRCLIHDNAD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05844 180 FunFam 40S ribosomal protein S16 1 119 - -
Trre8g05844 180 ProSitePatterns Ribosomal protein S9 signature. 68 86 IPR020574 GO:0003735|GO:0005840|GO:0006412
Trre8g05844 180 Pfam Ribosomal protein S9/S16 8 104 IPR000754 GO:0003735|GO:0005840|GO:0006412
Trre8g05844 180 SUPERFAMILY Ribosomal protein S5 domain 2-like 3 100 IPR020568 -
Trre8g05844 180 PANTHER RIBOSOMAL PROTEIN S9 2 103 IPR000754 GO:0003735|GO:0005840|GO:0006412
Trre8g05844 180 Gene3D - 1 118 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05844 Trre-Chr8 59139615 59141147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05844 2 112 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 86.486 2.16e-67 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05844 K02960 - rcu:8288339 211.846