LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g05824	ATGGTGAAAGCAGCGAGCAACGATAATGGTTCTGTTTCTTCTTCTGTTGCACCTTTCTTGAAAAAATGTTACGATATGGTCGAAGATCGTTCAACCGATTCCATCATCTATTGGTCCCAAACTGGTCACAGTTTCATAATCTCCAACGTTGATCAATTCTCTCTCACTCTTCTCCCCAATTATTTCAAACACAACAATTTCTCCAGTTTCGTCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATGCAGATCACTGGGAGTTTGCGAATGAGAACTTCATCAGGGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCACATGGTGCAGATCAGCAGAAAGCATTGCCACAGAAAGAAAATCGTGTTGATGAACAATCACAAGAAGCAACAAATCACGGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGACAGAAACTCCCTCACGCAAGAGTTGGTCAAACATAAGCAGCGCCTAGAATCTTCGGAGAGTAAGTTGCTTCTACTGAGTGATCGTCTTGAAGGAATGGAGAAGCATCAGGAGCAGATGCTATCATTCTTGGTCATGGTTGTGCAGTGCCCTGGATTCCTGACTCAGCTGCTTCACCCTAAGGAAAATAATTGGCGTTTGGCTGAAGCAGGGAATGTGTTGTACCAAGATGATGAACCAGTTTCTTCTGATGGGATGATTATAAAGTATACGCCACCTGTTGCTGAAAAACTAAAGCCTGTAGTTCCACGATCTCCTGCCTTTCATAAGCAACCAGAACCCGAAATTTCTGCTGATGGGTTAAAAGATTTGTGTATCAGTTCCGAGTTCTTGAAATTGCTTCTAGATGAGAAACTGTCTCCGTTAGATAATCATTCTCCGTTTCTTGTACCAGATTTTCCTGATGACGGTTCATGGGAAAAACTTTTTTTAGGCAGTCCTTTCCTCGAAAATGCTGAAGACACTGATCATGGAAACAAGGAGCACACTGTTCGTGGCTTGGAGATGGAACCCCCCATATCTGCAACTCCAAATGAAAGATCTGCTTTTGAAGCGATGATTATAGAAATGGAGAATACTCATGCATGA	1092	0.4176	MVKAASNDNGSVSSSVAPFLKKCYDMVEDRSTDSIIYWSQTGHSFIISNVDQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDADHWEFANENFIRGQKHLLKNIRRRKHPHGADQQKALPQKENRVDEQSQEATNHGLWKEVENLKSDRNSLTQELVKHKQRLESSESKLLLLSDRLEGMEKHQEQMLSFLVMVVQCPGFLTQLLHPKENNWRLAEAGNVLYQDDEPVSSDGMIIKYTPPVAEKLKPVVPRSPAFHKQPEPEISADGLKDLCISSEFLKLLLDEKLSPLDNHSPFLVPDFPDDGSWEKLFLGSPFLENAEDTDHGNKEHTVRGLEMEPPISATPNERSAFEAMIIEMENTHA	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g05824	363	SMART	hsfneu3	15	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre8g05824	363	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	10	230	IPR027725	-
	Trre8g05824	363	ProSitePatterns	HSF-type DNA-binding domain signature.	58	82	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre8g05824	363	MobiDBLite	consensus disorder prediction	108	135	-	-
	Trre8g05824	363	FunFam	Heat stress transcription factor B-4	11	109	-	-
	Trre8g05824	363	Gene3D	-	11	109	IPR036388	-
	Trre8g05824	363	PRINTS	Heat shock factor (HSF) domain signature	70	82	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre8g05824	363	PRINTS	Heat shock factor (HSF) domain signature	57	69	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre8g05824	363	PRINTS	Heat shock factor (HSF) domain signature	19	42	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre8g05824	363	MobiDBLite	consensus disorder prediction	114	131	-	-
	Trre8g05824	363	SUPERFAMILY	"Winged helix" DNA-binding domain	14	108	IPR036390	-
	Trre8g05824	363	Coils	Coil	143	170	-	-
	Trre8g05824	363	Pfam	HSF-type DNA-binding	19	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g05824	Trre-Chr8	59039761	59041754	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g05824	16	315	HSF	AT1G67970	47.682	1.38e-88	270

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Trre8g05824		HSF_DNA-bind	2.5e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g05824	K09419		-	gmx:100813694	542.347