Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05819 ATGACACTTCCTATTGAGGAAGAGCTGTTTTCTCTTGAACAATTTACAAACAATGTTAGGGTTCTTGCTATTGATCATGATATCAATATTCTCAATTATATTGAGAAAATGTGCTCTCAATTCGAATATCCAGTTAAGACATGCACCAAAGTTTCCGATGCCTTAAATCTTTTGAATAAAGAAAAAGATAGTTTTGATGTGGTAGTGATTGAAGCTCAAATGCCCGACATGGATTCTTGTGATTTTTTGCAACATGTTATACAACAATTTAATATTCCTGTCATTATGATGTGTGTTGATAGCTCAAAAAGTGTTGTGATGCATGCTGTTTTAAAAGGAGCATGCGATTACTGGATCAAACCATTGATTGAGGATCAAATCAAGTTTATATGGAAATATATTGCAATGAAAATTTTTAATGAAACTAAAAAATTAGGAATTGATGAAAAATTGGAGGTTGAAGTAAAGAAAGAATTGGAGAAAGAGGATTCAAAATTGCCATTAATCGGCGAAACAAGAGAAAGTGAGATCGATAATAATGTCACACAAGAGAGTGTTGAAGAGGACAAAAATAAATCTCCACCTAAGAAACCACGTGTTGTATGGTCACAAGAATTGCATAAAAAATTTCTCAATGCTCTGATGGAACTCAATATTGATAAGGCTGTACCAAGAAAAATTCTTGAAAAGATGAATATACCTGAATTGACAAGAGAACATGTTGCTAGTCATTTACAGAAATTTAGACTTTGTTTGAAGGCAGAGGCTGAAAAAGAGCAACAAAAACAAATGTCACAATATTTTTCAGGATATTATTTTCAACCTTATGATCCTTCCACTTCTTCTACTCATGCTGCTCTTTATCATCAAGTGCCAAAAATGTACCAAAACCCAAATGCCATATTCACATCATCATCATCATCATCATCACCACTGTGGCCTAACAATTCTCATGCTGCACTACAACAAAGTTCAATGCCATATCTCTTCAATTCTTCTCAGTCCAACAATTTAATGTTGCAGCAGCTTCCATCAGCATCTAATAATATAGCTCATGGTAATGGTTTTGGAATGTTTGTGAATAATACATTGCATTTGGAGCAGGAACATGATGTTCATCAAACTAACATGACAATTTCAGGAACTAATTTTGGAGTAGAAAATAGTCTAGCTTTTGTCAACCAGCTCAATGGCAGTAGATTTGGCATTAATTCATCATATAATAGTAGTCTTAATGCTGGTCTTCGAAGCACGCTAGGGGGAAGCTTTTCATTAGGGAGCAGTTCTCATGAAATTCCAAGGACCCAACCTGTTCTAATGCCATCATTGCCGATTGATGCTTCGGGATCTTTGCGTGGTGTTTCGCCTTTTTGTGCTGCTGATATTGGTACTAGTACTAATGCCAATGCATCAATGTCATTGTTGCCAATTGATGCTTCCGGATCTTTGTGCGGTGTTTCGCCTTTTTGTGCTGCTGATATTGGCAATAGTACTAATGCCAATACACCAATGTCATCACCATTGCCGATTGATGCGTCAGGATCTTTGAGCGGTGTTTCGCCTTTTTGTGCTGCTGATTTTGGCAATAGTAATACTAATGCCAATGCACCAATGTCATTGTTGCCAATTGATGCTTCCGGATCTTTGCGCGGTGTTTTGACTTTTTGTGCTGCTGATATTGGCAATAGTACTAATGCAAATACACAAATGTCATCGTTGCCGATTGATGCTTCCGGATCTATGCTTGGTGTTTCGCCTTTTTATGCTACTGATATTGGTAATAGTACTAATGCCAATACACCAATGTCATCATTGCTGATTGATGCTTCAGGATCTTTGGGCGGTGTTTCTCCTTTTTGTGCTGCTGATACTAATGCCAATACAACAAAGGTGGATGAGCCAAATTCTATCTATGGTTCAACAATGGATAATCAAATTCCAACGACTCAACCTGTTCCAATGTCGTCATTGCCAATTGATGATGCTTTGGAATCTTTGAGTGGTGTTTCGCCTTTTTCTGCTGCTGATATTGATGATACTAATGCCAACACAACAAGGGAATTAGAGGAGGCAGAGCTGGATGCTATCTATGGTTCACTTCCGGATTTTATCTATTGA 2118 0.3716 MTLPIEEELFSLEQFTNNVRVLAIDHDINILNYIEKMCSQFEYPVKTCTKVSDALNLLNKEKDSFDVVVIEAQMPDMDSCDFLQHVIQQFNIPVIMMCVDSSKSVVMHAVLKGACDYWIKPLIEDQIKFIWKYIAMKIFNETKKLGIDEKLEVEVKKELEKEDSKLPLIGETRESEIDNNVTQESVEEDKNKSPPKKPRVVWSQELHKKFLNALMELNIDKAVPRKILEKMNIPELTREHVASHLQKFRLCLKAEAEKEQQKQMSQYFSGYYFQPYDPSTSSTHAALYHQVPKMYQNPNAIFTSSSSSSSPLWPNNSHAALQQSSMPYLFNSSQSNNLMLQQLPSASNNIAHGNGFGMFVNNTLHLEQEHDVHQTNMTISGTNFGVENSLAFVNQLNGSRFGINSSYNSSLNAGLRSTLGGSFSLGSSSHEIPRTQPVLMPSLPIDASGSLRGVSPFCAADIGTSTNANASMSLLPIDASGSLCGVSPFCAADIGNSTNANTPMSSPLPIDASGSLSGVSPFCAADFGNSNTNANAPMSLLPIDASGSLRGVLTFCAADIGNSTNANTQMSSLPIDASGSMLGVSPFYATDIGNSTNANTPMSSLLIDASGSLGGVSPFCAADTNANTTKVDEPNSIYGSTMDNQIPTTQPVPMSSLPIDDALESLSGVSPFSAADIDDTNANTTRELEEAELDAIYGSLPDFIY 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05819 705 SUPERFAMILY CheY-like 17 134 IPR011006 -
Trre8g05819 705 FunFam Two-component response regulator 193 255 - -
Trre8g05819 705 Pfam Response regulator receiver domain 21 127 IPR001789 GO:0000160
Trre8g05819 705 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Trre8g05819 705 SUPERFAMILY Homeodomain-like 195 253 IPR009057 -
Trre8g05819 705 Coils Coil 674 694 - -
Trre8g05819 705 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 311 IPR045279 GO:0009736
Trre8g05819 705 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Trre8g05819 705 Gene3D - 195 254 - -
Trre8g05819 705 Gene3D - 17 149 - -
Trre8g05819 705 MobiDBLite consensus disorder prediction 170 198 - -
Trre8g05819 705 CDD REC_typeB_ARR-like 21 135 - -
Trre8g05819 705 SMART REC_2 19 131 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05819 Trre-Chr8 58992481 58995429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05819 3 274 Response Regulator Gene Family AT4G31920 34.559 1.93e-46 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre8g05819 Response_reg 1.5e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05819 - - tpra:123915068 305.449