Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05818 ATGGCACTTTCCATTAAAGAGTTGTTTACTCAACAATTTGCAACCAATATTAGGGTTCTTGTGATTGATCATGATATCAATCTTCTCAATTCTATTGAGAAAGTATGCCATCAATTTCATTACTCAGTCAAGACATGCTCAAAGGTTTCAGATGCTTTGTATCTTTTGATGGAAAAAAATGATAGTTTTGATTTGGTACTAATTGAAGCCAAAATGCCTGATATGGATTCATATGAATTTTTGCGACATGTTACACAACAAATTAATATTCCTATTATTATGATGTGTGCTGATAACAAAAGAAGTGATGTGATGAAGGCTGTTGACGATGGAGCTTGTGATTATTGGACCAAACCATTGCCTGAGACTCTAATTCAAAACATGTGGCAACATGTTGCAAGGAAACTTTGGAATGAAAGTAAAAACCTACAGTTTAGTGAAAAAGAGGAGAGTTGTGATTCAAAATTGCCCTTAATTGATCCAAAAATAGGAGTGATCAACACTAATGCGAAACAAGAGAGTATTGAAAAGAATAATGACAAACCTGAATCATCGGCGAAGAAAACACGCGTTACATGGTCAGATGAGTTGCATAAAAAGTTTGTTAGTGTTGTTACGGAACTCAATATTGATAAGGCAGTGCCCAAAAAAATTCTTGCAAGGATGAATGAGCCTGGATTGACAAGAGAGCATGTAGCTAGTCACTTACAGAAATATAGGCTTTATTTGAAGAGAGGAGAGACAAAGAAACAAAAAAAACATAACATGCTTGCAGAAGCTACAAAATCCAATATTTCAAATGGATCTTCAGAATTTAATTTTGAAGCTTATGATGTTTCTACTTCTCATGTTCCCAACAATTTCATTGCTCCTGAATCTAAGAATATAATTAAAGCAACTCCAGTTAATATTTATCAAACTGATTCTGAGGAAGAAACTAGTTCAGCTTCTATCAACCAACAAAATTACAATGGATTTGGAACTAATTCAATTATTAATCCATCATTTGTAAATACTATTAATGCTCGTTTTCCAAACGCGCAAGTTAGAAATATTTACTTAGCCTGGCATCATCCCTCTCCAAGTTCTAATGACTCATCTTCTTCCAATGATCATTGA 1119 0.3378 MALSIKELFTQQFATNIRVLVIDHDINLLNSIEKVCHQFHYSVKTCSKVSDALYLLMEKNDSFDLVLIEAKMPDMDSYEFLRHVTQQINIPIIMMCADNKRSDVMKAVDDGACDYWTKPLPETLIQNMWQHVARKLWNESKNLQFSEKEESCDSKLPLIDPKIGVINTNAKQESIEKNNDKPESSAKKTRVTWSDELHKKFVSVVTELNIDKAVPKKILARMNEPGLTREHVASHLQKYRLYLKRGETKKQKKHNMLAEATKSNISNGSSEFNFEAYDVSTSHVPNNFIAPESKNIIKATPVNIYQTDSEEETSSASINQQNYNGFGTNSIINPSFVNTINARFPNAQVRNIYLAWHHPSPSSNDSSSSNDH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05818 372 SUPERFAMILY Homeodomain-like 186 245 IPR009057 -
Trre8g05818 372 Gene3D - 15 153 - -
Trre8g05818 372 MobiDBLite consensus disorder prediction 174 190 - -
Trre8g05818 372 Pfam Myb-like DNA-binding domain 190 240 IPR001005 -
Trre8g05818 372 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 290 IPR045279 GO:0009736
Trre8g05818 372 CDD REC_typeB_ARR-like 19 133 - -
Trre8g05818 372 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Trre8g05818 372 SMART REC_2 17 129 IPR001789 GO:0000160
Trre8g05818 372 SUPERFAMILY CheY-like 16 147 IPR011006 -
Trre8g05818 372 MobiDBLite consensus disorder prediction 170 190 - -
Trre8g05818 372 Gene3D - 184 245 - -
Trre8g05818 372 Pfam Response regulator receiver domain 19 125 IPR001789 GO:0000160
Trre8g05818 372 FunFam Two-component response regulator 184 247 - -
Trre8g05818 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 188 241 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05818 Trre-Chr8 58988325 58990071 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05818 12 245 Response Regulator Gene Family AT2G25180 39.834 3.71e-49 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre8g05818 Response_reg 2.7e-15 CL0304