Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05817 ATGACACTTTGCAAAGATGTCTTTCCTCAACAATTTATACCCAATGTTAGGGTTCTTGTGATTGATCATGATATCAATCGTCTCAATGCTATTGATAATATATGCTCTCAATTCTATCATGAAGTTAAGACATGCTCTAAGGTGTATGAAGCTTTGAATCTTTTGATGGAAAGAAAGGATCGTTTTGATGTGGTACTAATTGAAGCTAAAATGCCAGATATGGATTCATACGATTTTATGCATTATGCTACACATAAAATCAATATCCCTGTGATTGTGATGGGTGTTGATGACAAAAGTGCTGTATTGAAAGCTATTACAAATGGTGCTTGTGATTATTGGATCAAGCCATTGAGTGAAAATCAAATTAAGAACATGTGGCAACATGTTCTAAGAAATTTAGTGAATGAAAGTAAAAATCAAGAAAATAATGAAAATTTGGAGGTTGAAGACATGAAAAAAGGAGAAGGAGATGTTTCAAAATTTTCGTTGATTGATGGAACAATAATAGGATATATTAAAAATAATGTTGAAAATAATAAAGAAAACCATGAATCTTCAACAAAGAAGGCACGTTTTGTATGGTCACAAGAATTACATGAAAAATTTGTTAGTATTGTGACGGTGCTCAATATTGATACGGCTGTACCCAAGAAAATTGTTGAACGTATGAATGTGACTGGATTGACAAGATGGCATGTAGCTAGTCATCTACAGAAATTTAGACTTTCTTTGAAGAGAGGAAAGACAATGAAAGTGCAAAAACAGAATGGAGCTGCAGAAGCTACATAA 792 0.327 MTLCKDVFPQQFIPNVRVLVIDHDINRLNAIDNICSQFYHEVKTCSKVYEALNLLMERKDRFDVVLIEAKMPDMDSYDFMHYATHKINIPVIVMGVDDKSAVLKAITNGACDYWIKPLSENQIKNMWQHVLRNLVNESKNQENNENLEVEDMKKGEGDVSKFSLIDGTIIGYIKNNVENNKENHESSTKKARFVWSQELHEKFVSIVTVLNIDTAVPKKIVERMNVTGLTRWHVASHLQKFRLSLKRGKTMKVQKQNGAAEAT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05817 263 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 239 IPR045279 GO:0009736
Trre8g05817 263 CDD REC_typeB_ARR-like 18 131 - -
Trre8g05817 263 SUPERFAMILY Homeodomain-like 188 247 IPR009057 -
Trre8g05817 263 SUPERFAMILY CheY-like 14 148 IPR011006 -
Trre8g05817 263 Gene3D - 186 247 - -
Trre8g05817 263 Gene3D - 15 153 - -
Trre8g05817 263 ProSiteProfiles Response regulatory domain profile. 17 131 IPR001789 GO:0000160
Trre8g05817 263 SMART REC_2 16 127 IPR001789 GO:0000160
Trre8g05817 263 FunFam Two-component response regulator 186 249 - -
Trre8g05817 263 Pfam Response regulator receiver domain 18 126 IPR001789 GO:0000160
Trre8g05817 263 NCBIfam myb-like DNA-binding domain, SHAQKYF class 190 243 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05817 Trre-Chr8 58980987 58986877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05817 11 247 Response Regulator Gene Family AT2G25180 36.220 1.45e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre8g05817 Response_reg 9.9e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05817 - K14491 tpra:123913574 283.878