Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05816 ATGGAACTCAATATTGATAAGGCTGTACCAAGAAAAATTCTTGAAAAGATGAATATGCCTGAATTGACAAGAGAACATGTTGCTAGTCATCTACATAAATTTAGACTTTGTTTGAAGGCAGAGGCTGAAAAAGAACAACAAAAACAAACGTCACAATATTTTTCAGGATATTATTTTCAACCTTATGATCCTTCCACTTCTTCTACTCATGCTGCTCTTTATCATCAAGTGCCAAAAATGTACCAAAACCCAAATGCCATATTCACATCATCATCATCATCATCACCACTGTGGCCTAACAATTCTCATGCTGCACTACAACAAAGTTCAATGCCATATCTCTTCAATTCTTCTCAATCCAACAATTTAATGTTGCAGCAGCTTCCATCATCACCACTGCTCAATGGCAGTAGATTTGGCATTAATTCATCATATAATAGTGGTCTTAATGCTGGTCTTCGAAGCACGCTAGGGGGAAGCTTTTCATTAGGGAGCAGTTCTCATGAAATTCCAAGGACCCAACCTGTTCTAATGCCATCATTGCCGATTGATGCTTCGGGATCTGTGCGTGGTGTTTCGCCTTTTTGTGCTGCTGATATTGGTACTAGTACTAATGCCAATGCACCAATGTCATTGTTGCCAATTGATGCTTCCGGATCTTTGTGTGGTGTTTCGCCTTTTTGTGCTGCTGATATTGGCAATAGTACTAATGCCAACACACCAATGTCATCACCATTGCCGATTGATGCGTCAGGATCTTTGAGCGGTGTATCGTCTTTTTGTGCTGCTGATTTTGGCAATAGTAATACTAATGCCAATACACCAATGTCATCATTGTCAATTGATGCTTCGGGATCTTTGCGCGGTGTTTCGACTTTTTGTGCTGCTGATATTGGCAATAGTAATACTAATGCCAATACACCAATGTCATTATTGCCAATTCATGCTTCAGGATCTATGCTTGGTGTTTCGCCTTTTTGTGCTGCTGATATTGGCAATAGTACTAATGCAAATACACCAATGTCATCGTTGTCGATTGATGCTTCCGGATCTATGCTTGGTGTTTCGCCTTTTTACGCTGCTGATATTGGTAATAGTACTAATGCCAATACACCAATGTCATCATTGCTGATTGATGCTTCGGGATCTTTGGGCGGTGTTTCGCCTTTTTGTGCTGTTGATACTAATGCCAATACAACAAAGGTGGATGAGCCAAATTCTATCTATGGTTCAACAATGGATCATCAAATTCCAACGACTCAACCGGTTCCAATGTCGTCATTGCCAATTGATGATGCTTTGGAATCTTTGAGTGGTGTTTCGCCTTTTTCTGCTGCTGATATTGGTGATACTAATGCCAACACAACAAGGGAATTAGAGGAGGCAGAGTTGGATGCTATCTATGGTTCACTGCCGGATTTGATCTATTGA 1431 0.4039 MELNIDKAVPRKILEKMNMPELTREHVASHLHKFRLCLKAEAEKEQQKQTSQYFSGYYFQPYDPSTSSTHAALYHQVPKMYQNPNAIFTSSSSSSPLWPNNSHAALQQSSMPYLFNSSQSNNLMLQQLPSSPLLNGSRFGINSSYNSGLNAGLRSTLGGSFSLGSSSHEIPRTQPVLMPSLPIDASGSVRGVSPFCAADIGTSTNANAPMSLLPIDASGSLCGVSPFCAADIGNSTNANTPMSSPLPIDASGSLSGVSSFCAADFGNSNTNANTPMSSLSIDASGSLRGVSTFCAADIGNSNTNANTPMSLLPIHASGSMLGVSPFCAADIGNSTNANTPMSSLSIDASGSMLGVSPFYAADIGNSTNANTPMSSLLIDASGSLGGVSPFCAVDTNANTTKVDEPNSIYGSTMDHQIPTTQPVPMSSLPIDDALESLSGVSPFSAADIGDTNANTTRELEEAELDAIYGSLPDLIY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05816 476 SUPERFAMILY Homeodomain-like 3 39 IPR009057 -
Trre8g05816 476 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 129 IPR044841 GO:0003700|GO:0006355
Trre8g05816 476 NCBIfam myb-like DNA-binding domain, SHAQKYF class 4 36 IPR006447 GO:0003677
Trre8g05816 476 Gene3D - 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05816 Trre-Chr8 58975635 58979069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05816 2 60 Response Regulator Gene Family AT5G58080 51.613 1.29e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre8g05816 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05816 - K14491 tpra:123915068 98.2117