Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05815 ATGGCTATGGCAAGAGATAAAAAAGAAGATGAAGAAGAGGTTCATAATCAAAATCAAAAAGGTGGGAAGAGATTGAAATGCATGAACAAGATGAAGAATGAACAAGAAAAAAAAGTTGTAGTTGATGAAGTAGAAGAAAGTGAACTTCCATTGAAACCAGACCTTTTCTTCTACCCAACAACACCAACATCTTTTATTGTTGCAGATGCGCTTGAATCAGATTTTCCCATAATTTATGTCAACAAAGTCTTTGAAATTTCAACTGGGTATCGTGCTCATGAAGCCCTTGGTAGAAACTGTCGATTCTTACAATATAGAGATCCTCGAGCTCAAAGGCGGCACCCTTTGGTGGATCCAGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTCAACAGACTGAGACTTACACCGATTCATGACGATGGTGGAATTGTGACGCACGTAATAGGTATCCAGATATTTTCCGAGGCAAACATAGATCTTAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAACTGCTAAATATTCTCCCAAGAGTGGAAAGTTATTGTACAGTCCGCAGCAGCGTGAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTAGCACACAACATTTTGTCGCGCTTGACACCTAGGGATGTTGCATCAATTGGTTCTGTTTGCAGGAGGATCCGTCAATTAACAAAGAACGAGCATGTTAGGAAGATGGTTTGTCAAAATGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACAAAGAAGTTGGGATGGGGTCGTCTGTCTCGGGAGCTTACTACTCTCGAGGCTGTTTGCTGGAAAAAAGTGACTGTTGGAGGTGGGGTTGAGCCTTCGCGCTGCAACTTCAGTGCTTGTGCCGCAGGAAATAGGCTTGTATTGTTTGGAGGTGAAGGAGTCGATATGCAGCCTATGGATGACACTTTTGTTCTAAATCTTGATGCTAAAAATCCAGAATGGCAAAGGGTTAGTGTGAAATCATCCCCGCCTGGACGGTGGGGCCACACGCTCTCTTGCTTAAATAATTCTTGGCTGGTGGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTACTCGATTTGGATGCTCAGCAACCAACATGGAAGGAAGTATTTGGCGGAGCACCACCTCTTCCAAGATCATGGCACAGCTCTTGCACAATTGAAGGTTCCAAATTGGTTGTCTCGGGTGGTTGTACAGATGCTGGAGTACTTCTCAGTGATACATACTTACTAGACCTTACGATAGATAATCCTACATGGAGAGAGGTTCCAACTTCATGGACTCCACCTTCTAGGTTAGGGCACTCACTCTCAGTTTATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATTGATTTAGAAGCTGAACAACCAGAATGGACGCAACTAGAATGTAGTGCATTCACTGGATTAGCAAATCAAAATGCAGTTGTACCTCCTCCTAGATTAGATCATGTTGCTGTAAGCATGCCTTGTGGGAGGGTCATTATATTTGGTGGTTCCATTGCAGGTCTTCACTCACCGTCTCAGCTATTTCTATTGGATCCGGCTGAAGAGAAACCATCATGGAGGATTCTCAACGTTCCCGGGGAACCACCTAAATTTGCTTGGGGGCATAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTGTTGGGTGGACATACTGGAGAGGAATGGGTACTCAATGAGTTGCATGAGTTATGCTTGGCAAGCCGACAAGACTCCGACATGTGA 1911 0.4359 MAMARDKKEDEEEVHNQNQKGGKRLKCMNKMKNEQEKKVVVDEVEESELPLKPDLFFYPTTPTSFIVADALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDGGIVTHVIGIQIFSEANIDLNRVSYPVFRETCIQDFDKTAKYSPKSGKLLYSPQQREEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLSRELTTLEAVCWKKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVKSSPPGRWGHTLSCLNNSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGGAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREVPTSWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPEWTQLECSAFTGLANQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGEPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05815 636 Pfam Galactose oxidase, central domain 317 367 - -
Trre8g05815 636 Gene3D - 298 499 IPR015915 GO:0005515
Trre8g05815 636 SMART pac_2 136 177 IPR001610 -
Trre8g05815 636 Pfam F-box domain 223 260 IPR001810 GO:0005515
Trre8g05815 636 MobiDBLite consensus disorder prediction 1 20 - -
Trre8g05815 636 NCBIfam PAS domain S-box protein 73 171 IPR000014 -
Trre8g05815 636 FunFam Adagio protein 1 53 183 - -
Trre8g05815 636 Gene3D - 500 630 IPR015915 GO:0005515
Trre8g05815 636 FunFam Putative LOV domain-containing protein 500 632 - -
Trre8g05815 636 CDD F-box_AtADO-like 222 268 - -
Trre8g05815 636 Pfam PAS domain 71 172 IPR000014 -
Trre8g05815 636 Gene3D PAS domain 58 183 - -
Trre8g05815 636 Pfam Galactose oxidase, central domain 382 429 - -
Trre8g05815 636 Pfam Galactose oxidase, central domain 431 482 - -
Trre8g05815 636 Pfam Kelch motif 541 588 IPR011498 GO:0005515
Trre8g05815 636 FunFam Putative LOV domain-containing protein 294 499 - -
Trre8g05815 636 CDD PAS 61 171 IPR000014 -
Trre8g05815 636 MobiDBLite consensus disorder prediction 1 28 - -
Trre8g05815 636 SUPERFAMILY PYP-like sensor domain (PAS domain) 64 172 IPR035965 -
Trre8g05815 636 Gene3D - 216 267 - -
Trre8g05815 636 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 43 630 - -
Trre8g05815 636 SUPERFAMILY F-box domain 217 298 IPR036047 GO:0005515
Trre8g05815 636 SUPERFAMILY Galactose oxidase, central domain 304 621 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05815 Trre-Chr8 58966869 58969473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05815 64 185 AGC Kinase Gene Family AT5G58140 32.258 2.41e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05815 K12116 - gmx:100301889 1149.81