LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g05812	ATGGCTGAACGTGGCGGAGATCGTGGTGGTTTTGGTAGCGGTTTCGGTGGTCGTGGTGACAGAGGTGGTCGCGGTGGTCGTGGTGACAGAGGTCGTGGTGGTCGTCGTAGAGCAGGTGGAAGACGTGAAGAAGAAGAGAAATGGGTTCCAGTGACCAAACTCGGTCGTCTCGTGAAAGAAGGAAAGATCCGTAGCCTTGAACAGATCTACCTTCATTCACTCCCAATCAAGGAGCATCAAATCATCGACACTCTCGTCGGTCCAACTCTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAGAAACAAACCAGAGCCGGTCAGAGAACCCGGTTCAAGGCTTTTGTGGTTGTTGGTGACAATAATGGTCACGTTGGTCTTGGTGTTAAGTGTAGCAAAGAAGTAGCTACTGCTATTCGTGGTGCTATTATCTTAGCTAAGCTTTCTGTTATTCCTGTTAGGAGAGGTTATTGGGGTAACAAGATTGGAAAGCCTCACACTGTTCCTTGTAAGGTTACTGGAAAGTGTGGTTCTGTTACTGTTCGTATGGTTCCTGCTCCTCGTGGTTCTGGTATTGTTGCTGCTAGGGTTCCTAAGAAGGTCTTGCAATTTGCTGGTATTGATGATGTTTTCACTTCCTCTAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGGCTACATTTGACTGTTTGATGAAAACCTATGGGTTTTTGACACCTGAATTCTGGAAGGAGACTAGGTTCTCCAGATCTCCATTCCAAGAGTTTACTGATAGCTTATCTAAGCCAACTGGAAAGGCTTTGCTCATCGAGGAAGAGAGGGTGGAGGCTTGA	837	0.4707	MAERGGDRGGFGSGFGGRGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSRSPFQEFTDSLSKPTGKALLIEEERVEA	278

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g05812	278	PANTHER	RIBOSOMAL S SUBUNIT	42	236	IPR000851	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Trre8g05812	278	MobiDBLite	consensus disorder prediction	22	46	-	-
	Trre8g05812	278	Pfam	Ribosomal protein S5, N-terminal domain	90	154	IPR013810	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Trre8g05812	278	FunFam	40S ribosomal protein S2	153	246	-	-
	Trre8g05812	278	SUPERFAMILY	dsRNA-binding domain-like	86	155	-	-
	Trre8g05812	278	Gene3D	-	47	152	-	-
	Trre8g05812	278	MobiDBLite	consensus disorder prediction	1	46	-	-
	Trre8g05812	278	FunFam	40S ribosomal protein S2	47	152	-	-
	Trre8g05812	278	Pfam	Ribosomal protein S5, C-terminal domain	174	246	IPR005324	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g05812	278	NCBIfam	30S ribosomal protein S5	43	250	IPR005711	GO:0003735\|GO:0006412\|GO:0015935

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g05812	Trre-Chr8	58942893	58944352	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g05812	44	266	Cytoplasmic Ribosomal Protein Gene Family	AT3G57490	91.480	4.92e-152	424

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g05812	K02981		-	gmx:100797105	474.552

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