Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05812 ATGGCTGAACGTGGCGGAGATCGTGGTGGTTTTGGTAGCGGTTTCGGTGGTCGTGGTGACAGAGGTGGTCGCGGTGGTCGTGGTGACAGAGGTCGTGGTGGTCGTCGTAGAGCAGGTGGAAGACGTGAAGAAGAAGAGAAATGGGTTCCAGTGACCAAACTCGGTCGTCTCGTGAAAGAAGGAAAGATCCGTAGCCTTGAACAGATCTACCTTCATTCACTCCCAATCAAGGAGCATCAAATCATCGACACTCTCGTCGGTCCAACTCTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAGAAACAAACCAGAGCCGGTCAGAGAACCCGGTTCAAGGCTTTTGTGGTTGTTGGTGACAATAATGGTCACGTTGGTCTTGGTGTTAAGTGTAGCAAAGAAGTAGCTACTGCTATTCGTGGTGCTATTATCTTAGCTAAGCTTTCTGTTATTCCTGTTAGGAGAGGTTATTGGGGTAACAAGATTGGAAAGCCTCACACTGTTCCTTGTAAGGTTACTGGAAAGTGTGGTTCTGTTACTGTTCGTATGGTTCCTGCTCCTCGTGGTTCTGGTATTGTTGCTGCTAGGGTTCCTAAGAAGGTCTTGCAATTTGCTGGTATTGATGATGTTTTCACTTCCTCTAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGGCTACATTTGACTGTTTGATGAAAACCTATGGGTTTTTGACACCTGAATTCTGGAAGGAGACTAGGTTCTCCAGATCTCCATTCCAAGAGTTTACTGATAGCTTATCTAAGCCAACTGGAAAGGCTTTGCTCATCGAGGAAGAGAGGGTGGAGGCTTGA 837 0.4707 MAERGGDRGGFGSGFGGRGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSRSPFQEFTDSLSKPTGKALLIEEERVEA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05812 278 PANTHER RIBOSOMAL S SUBUNIT 42 236 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre8g05812 278 MobiDBLite consensus disorder prediction 22 46 - -
Trre8g05812 278 Pfam Ribosomal protein S5, N-terminal domain 90 154 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre8g05812 278 FunFam 40S ribosomal protein S2 153 246 - -
Trre8g05812 278 SUPERFAMILY dsRNA-binding domain-like 86 155 - -
Trre8g05812 278 Gene3D - 47 152 - -
Trre8g05812 278 MobiDBLite consensus disorder prediction 1 46 - -
Trre8g05812 278 FunFam 40S ribosomal protein S2 47 152 - -
Trre8g05812 278 Pfam Ribosomal protein S5, C-terminal domain 174 246 IPR005324 GO:0003735|GO:0005840|GO:0006412
Trre8g05812 278 NCBIfam 30S ribosomal protein S5 43 250 IPR005711 GO:0003735|GO:0006412|GO:0015935
Trre8g05812 278 SUPERFAMILY Ribosomal protein S5 domain 2-like 166 246 IPR020568 -
Trre8g05812 278 Gene3D - 153 246 IPR014721 -
Trre8g05812 278 ProSitePatterns Ribosomal protein S5 signature. 107 139 IPR018192 -
Trre8g05812 278 ProSiteProfiles S5 double stranded RNA-binding domain profile. 90 153 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05812 Trre-Chr8 58942893 58944352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05812 44 266 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.480 4.92e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05812 K02981 - gmx:100797105 474.552