Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05810 ATGTCATCACCGAGTTATGCCCACGCGCACACGCCGCTCATTCGCCCCCGCCGCGTGGGCCGCACGCCAGTCCTCGCTCTCCTTCTCGGACGCCGAGGTCCTTCCGTTCTTGTCCGTGAAACAGCGGCGCGTGAGCTTGAGGAGCGGCGCGCTGATTGGGGTTACTCGAAGCCGGTAGTATTGCTTGACATCGCGTGGAACACGGTTTTCGTTGTGGTCGCGGCGGTTATGTTAGGTTTCACCGTTGACGAGAATCCTAACACGCCGATTCGGTTGTGGATCTGTGGTTATGCGGTGCAGTGTCTGGTTCACGTGGCGTTGGTGTGGTTGGAGTACAAGAGGAGGAATGGAGTTGGAGGAGGAAGGGACGAGGAAGCTTTTGATGAAGATGTCAATGGCAGTGAGGATGATGATGGTGATGTTGAATTTCGAAATTCTTCTCGCTCCGGATTTGCAAAACGATGTGCGTCGTTGAATACCATGCTTTCATTGGTTTGGTGGATGGTGGGATTTTACTGGGTTGTCTATGGTGGTGATATTCTAATGCAAGACGCTCCACGGTTGTACTGGTTGGCCGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCTATCTTTTGTGTTGCTTTGGCATGTTTAATTGGCATTGCCCTCTGCTGTTGTTTACCCTGTATTATTGGCATTCTCTATGCTGTTGCAGGACAGGAGGGTGCCTCTGAATCAGATCTCAGTATACTTCCAAAATTCCGGTTTCAGGCGGTAAGCAATGAAGAAACACCTGATCCAAGAGGTGGATCAATGGTTCCCATTGAAAATAGCAGTGGTGCAAATGAACGAGTGCTTTCACCCGAGGATGCGGAATGCTGTATATGCATCTCTCCCTATGAGGATGGAGCAGAACTTCATGCTCTTCCCTGTAACCACCATTTCCACTCCACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAATACAATATTCTTAAGGGAAATGAACAGGTGTGA 1017 0.4926 MSSPSYAHAHTPLIRPRRVGRTPVLALLLGRRGPSVLVRETAARELEERRADWGYSKPVVLLDIAWNTVFVVVAAVMLGFTVDENPNTPIRLWICGYAVQCLVHVALVWLEYKRRNGVGGGRDEEAFDEDVNGSEDDDGDVEFRNSSRSGFAKRCASLNTMLSLVWWMVGFYWVVYGGDILMQDAPRLYWLAVVFLAFDVFFAIFCVALACLIGIALCCCLPCIIGILYAVAGQEGASESDLSILPKFRFQAVSNEETPDPRGGSMVPIENSSGANERVLSPEDAECCICISPYEDGAELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05810 338 FunFam E3 ubiquitin protein ligase RIE1 267 335 - -
Trre8g05810 338 Pfam Ring finger domain 286 328 IPR001841 -
Trre8g05810 338 PANTHER TARGET OF ERK KINASE MPK-1 30 336 - -
Trre8g05810 338 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Trre8g05810 338 SUPERFAMILY RING/U-box 277 332 - -
Trre8g05810 338 CDD RING-H2_PA-TM-RING 286 328 - -
Trre8g05810 338 SMART ring_2 287 327 IPR001841 -
Trre8g05810 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 336 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05810 Trre-Chr8 58928454 58932287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05810 3 337 C3H Transcription Factor Family AT1G68070 66.181 2.32e-166 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05810 - K13148 gmx:100797651 492.271