Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05796 ATGTCATCGTCGTTGAGTCACGTCCGTCCGCTAACATGCGCATCATCGTCATTATCACGAATAGCTCCCCATCCACACGACCTCGTCAAATGGGTAACCAGAGAAGGTGGTTTCGTTCACCGTGCGGTTAAGATTGCTCAATTCGATTCCTCCAATGGTTTAGGGTTAGTAGCTAAGGAACAAATCCCAATTGGCACTGACCTAATTGTTCTTCCCCAACACATTCCTTTGCACTTCACCTCTCATCATAATCACTCTGATTCTCTCCTCCTTCAATTGTCCTCCAATGTTCCCGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTACATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGCAATCTCCCACAAACTTACACTCTTCCTATCTTTTTTCCTGGGGAAGACATTAAGAATTTGCAGTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTCGATTTTGAGCAACAAGTCAAGCATGCATTAGTCGGTCTTACACCAGATAAACATCCTTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTCAAGTTGCATGGTAACAAGCAATCAGATGGGATAGACTTCAACATACCCACGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTAATCCGAATGCTAGAATTGTTCAGGAACAAGAAACTGGTAGCACAAAGATGCGGGTGAAGGTTGTGGCTGAGAAAGCAATCAAAGAAAATGATCCTTTATTGCTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACAGTCAAACCCTTATGACTGTATTGAGCTTAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAACTTCTCCACACCGGCTCCATGGCAGCAACTTGTTTTATCTCAGTTAAATCTAGCTGGAGAATCTCCAAATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAAGGGCGCTTGTTGGCTGCACTGAGAGTACTCCTTGCAAGTGATATGGAAACTGTACAAAAGCATGACCTCAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATTGCTGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTGGAACACTTTCCCACCAAATTAGTGGATGATGAAACTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAGAAACCTCTCAAGGAAGGTAAAGCTTATTTCATCAAAGGATACAGTTACTGCTGAAGGCTAA 1404 0.4209 MSSSLSHVRPLTCASSSLSRIAPHPHDLVKWVTREGGFVHRAVKIAQFDSSNGLGLVAKEQIPIGTDLIVLPQHIPLHFTSHHNHSDSLLLQLSSNVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFEQQVKHALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSDGIDFNIPTMLPLIDMCNHSFNPNARIVQEQETGSTKMRVKVVAEKAIKENDPLLLCYGCLSNDLFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQQLVLSQLNLAGESPNLKVSLGGQEIIEGRLLAALRVLLASDMETVQKHDLNTLKSLDAEAPLGVANDIAVFRTLIALCVIALEHFPTKLVDDETLLKQGASGSTELAIQFRIQKKSVIIDVMRNLSRKVKLISSKDTVTAEG 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05796 467 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 21 428 - -
Trre8g05796 467 Pfam SET domain 53 272 IPR001214 GO:0005515
Trre8g05796 467 Pfam Rubisco LSMT substrate-binding 322 442 IPR015353 -
Trre8g05796 467 Gene3D set domain protein methyltransferase, domain 1 7 285 - -
Trre8g05796 467 SMART set_7 41 278 IPR001214 GO:0005515
Trre8g05796 467 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 282 460 IPR036464 -
Trre8g05796 467 CDD SET_LSMT 42 286 - -
Trre8g05796 467 Gene3D - 322 462 IPR036464 -
Trre8g05796 467 FunFam SET domain containing protein 308 461 - -
Trre8g05796 467 FunFam Histone-lysine N-methyltransferase setd3 1 285 - -
Trre8g05796 467 ProSiteProfiles SET domain profile. 41 272 IPR001214 GO:0005515
Trre8g05796 467 SUPERFAMILY SET domain 23 290 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05796 Trre-Chr8 58854081 58857807 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre8g05796 SET 7.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05796 - - gmx:100778387 747.273